Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05939

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05937 and H281DRAFT_05938 are separated by 12 nucleotidesH281DRAFT_05938 and H281DRAFT_05939 are separated by 158 nucleotidesH281DRAFT_05939 and H281DRAFT_05940 are separated by 46 nucleotides H281DRAFT_05937: H281DRAFT_05937 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 77,187 to 77,927 _05937 H281DRAFT_05938: H281DRAFT_05938 - hypothetical protein, at 77,940 to 78,152 _05938 H281DRAFT_05939: H281DRAFT_05939 - Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain, at 78,311 to 79,264 _05939 H281DRAFT_05940: H281DRAFT_05940 - polysaccharide transporter, PST family, at 79,311 to 80,615 _05940 Position (kb) 78 79 80Strain fitness (log2 ratio) -1 0 1at 77.551 kb on - strand, within H281DRAFT_05937at 78.566 kb on - strandat 79.408 kb on + strandat 79.408 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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77,551 - H281DRAFT_05937 0.49 -1.5
78,566 - +1.4
79,408 + +0.8
79,408 + +1.1

Or see this region's nucleotide sequence