Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05736

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05734 and H281DRAFT_05735 are separated by 294 nucleotidesH281DRAFT_05735 and H281DRAFT_05736 are separated by 313 nucleotidesH281DRAFT_05736 and H281DRAFT_05737 are separated by 702 nucleotides H281DRAFT_05734: H281DRAFT_05734 - aquaporin Z, at 6,774 to 7,514 _05734 H281DRAFT_05735: H281DRAFT_05735 - DNA-binding protein H-NS, at 7,809 to 8,111 _05735 H281DRAFT_05736: H281DRAFT_05736 - Glycosyltransferase involved in cell wall bisynthesis, at 8,425 to 9,489 _05736 H281DRAFT_05737: H281DRAFT_05737 - flagellar transcriptional activator FlhD, at 10,192 to 10,512 _05737 Position (kb) 8 9 10Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 7.703 kb on + strandat 7.725 kb on + strandat 7.763 kb on - strandat 7.791 kb on + strandat 8.007 kb on - strand, within H281DRAFT_05735at 8.010 kb on + strand, within H281DRAFT_05735at 8.030 kb on + strand, within H281DRAFT_05735at 8.030 kb on + strand, within H281DRAFT_05735at 8.033 kb on + strand, within H281DRAFT_05735at 8.034 kb on - strand, within H281DRAFT_05735at 8.034 kb on - strand, within H281DRAFT_05735at 8.165 kb on - strandat 8.365 kb on - strandat 8.365 kb on - strandat 8.484 kb on - strandat 8.495 kb on + strandat 8.495 kb on + strandat 8.496 kb on - strandat 8.608 kb on + strand, within H281DRAFT_05736at 8.608 kb on + strand, within H281DRAFT_05736at 8.609 kb on - strandat 8.613 kb on + strand, within H281DRAFT_05736at 8.613 kb on + strand, within H281DRAFT_05736at 8.614 kb on - strand, within H281DRAFT_05736at 8.615 kb on + strand, within H281DRAFT_05736at 8.616 kb on - strand, within H281DRAFT_05736at 8.616 kb on - strand, within H281DRAFT_05736at 8.849 kb on + strand, within H281DRAFT_05736at 8.849 kb on + strand, within H281DRAFT_05736at 8.849 kb on + strand, within H281DRAFT_05736at 8.849 kb on + strand, within H281DRAFT_05736at 8.850 kb on - strand, within H281DRAFT_05736at 8.850 kb on - strand, within H281DRAFT_05736at 8.970 kb on - strand, within H281DRAFT_05736at 9.023 kb on + strand, within H281DRAFT_05736at 9.023 kb on + strand, within H281DRAFT_05736at 9.023 kb on + strand, within H281DRAFT_05736at 9.023 kb on + strand, within H281DRAFT_05736at 9.023 kb on + strand, within H281DRAFT_05736at 9.024 kb on - strand, within H281DRAFT_05736at 9.200 kb on + strand, within H281DRAFT_05736at 9.200 kb on + strand, within H281DRAFT_05736at 9.201 kb on - strand, within H281DRAFT_05736at 9.201 kb on - strand, within H281DRAFT_05736at 9.201 kb on - strand, within H281DRAFT_05736at 9.201 kb on - strand, within H281DRAFT_05736at 9.201 kb on - strand, within H281DRAFT_05736at 9.247 kb on + strand, within H281DRAFT_05736at 9.247 kb on + strand, within H281DRAFT_05736at 9.247 kb on + strand, within H281DRAFT_05736at 9.248 kb on - strand, within H281DRAFT_05736at 9.410 kb on + strandat 9.410 kb on + strandat 9.411 kb on - strandat 9.461 kb on + strandat 9.462 kb on - strandat 9.508 kb on - strandat 9.680 kb on - strandat 9.701 kb on + strandat 9.702 kb on - strandat 9.785 kb on + strandat 9.787 kb on + strandat 9.787 kb on + strandat 9.787 kb on + strandat 9.788 kb on - strandat 9.823 kb on + strandat 9.824 kb on - strandat 9.824 kb on - strandat 9.824 kb on - strandat 9.847 kb on + strandat 9.849 kb on + strandat 9.849 kb on + strandat 9.924 kb on - strandat 9.939 kb on + strandat 9.964 kb on + strandat 10.012 kb on + strandat 10.012 kb on + strandat 10.028 kb on + strandat 10.028 kb on + strandat 10.028 kb on + strandat 10.029 kb on - strandat 10.029 kb on - strandat 10.175 kb on + strandat 10.175 kb on + strandat 10.176 kb on - strandat 10.243 kb on + strand, within H281DRAFT_05737at 10.243 kb on + strand, within H281DRAFT_05737at 10.244 kb on - strand, within H281DRAFT_05737at 10.244 kb on - strand, within H281DRAFT_05737

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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7,703 + -0.0
7,725 + -0.1
7,763 - +0.4
7,791 + +0.2
8,007 - H281DRAFT_05735 0.65 -0.4
8,010 + H281DRAFT_05735 0.66 +0.8
8,030 + H281DRAFT_05735 0.73 +0.9
8,030 + H281DRAFT_05735 0.73 -0.7
8,033 + H281DRAFT_05735 0.74 -1.4
8,034 - H281DRAFT_05735 0.74 -0.2
8,034 - H281DRAFT_05735 0.74 -1.0
8,165 - -0.0
8,365 - +0.7
8,365 - +0.4
8,484 - +0.1
8,495 + -1.2
8,495 + +0.4
8,496 - -1.0
8,608 + H281DRAFT_05736 0.17 +0.8
8,608 + H281DRAFT_05736 0.17 -0.1
8,609 - +1.4
8,613 + H281DRAFT_05736 0.18 +0.3
8,613 + H281DRAFT_05736 0.18 +0.4
8,614 - H281DRAFT_05736 0.18 -1.1
8,615 + H281DRAFT_05736 0.18 -0.3
8,616 - H281DRAFT_05736 0.18 +0.3
8,616 - H281DRAFT_05736 0.18 -3.0
8,849 + H281DRAFT_05736 0.40 +0.4
8,849 + H281DRAFT_05736 0.40 -1.7
8,849 + H281DRAFT_05736 0.40 +2.4
8,849 + H281DRAFT_05736 0.40 +0.3
8,850 - H281DRAFT_05736 0.40 +0.3
8,850 - H281DRAFT_05736 0.40 -0.7
8,970 - H281DRAFT_05736 0.51 +0.6
9,023 + H281DRAFT_05736 0.56 -1.9
9,023 + H281DRAFT_05736 0.56 +1.8
9,023 + H281DRAFT_05736 0.56 -0.2
9,023 + H281DRAFT_05736 0.56 +0.8
9,023 + H281DRAFT_05736 0.56 -0.2
9,024 - H281DRAFT_05736 0.56 +0.8
9,200 + H281DRAFT_05736 0.73 -0.1
9,200 + H281DRAFT_05736 0.73 +0.2
9,201 - H281DRAFT_05736 0.73 +0.7
9,201 - H281DRAFT_05736 0.73 +0.2
9,201 - H281DRAFT_05736 0.73 +0.0
9,201 - H281DRAFT_05736 0.73 +0.2
9,201 - H281DRAFT_05736 0.73 +0.2
9,247 + H281DRAFT_05736 0.77 -0.1
9,247 + H281DRAFT_05736 0.77 +0.3
9,247 + H281DRAFT_05736 0.77 -1.0
9,248 - H281DRAFT_05736 0.77 +0.6
9,410 + +0.1
9,410 + -0.6
9,411 - -0.4
9,461 + +0.2
9,462 - +0.9
9,508 - +0.4
9,680 - -0.1
9,701 + +0.5
9,702 - +0.1
9,785 + +1.3
9,787 + -0.1
9,787 + +0.3
9,787 + +2.7
9,788 - +1.9
9,823 + +0.3
9,824 - -0.2
9,824 - +0.0
9,824 - +0.1
9,847 + -2.0
9,849 + -0.4
9,849 + -0.6
9,924 - -1.1
9,939 + +0.6
9,964 + -0.4
10,012 + +0.1
10,012 + +0.4
10,028 + +0.4
10,028 + -0.0
10,028 + +0.8
10,029 - -0.7
10,029 - -1.0
10,175 + -0.5
10,175 + -2.1
10,176 - +0.2
10,243 + H281DRAFT_05737 0.16 -0.0
10,243 + H281DRAFT_05737 0.16 +1.0
10,244 - H281DRAFT_05737 0.16 -0.2
10,244 - H281DRAFT_05737 0.16 -1.5

Or see this region's nucleotide sequence