Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04386

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04384 and H281DRAFT_04385 are separated by 77 nucleotidesH281DRAFT_04385 and H281DRAFT_04386 are separated by 18 nucleotidesH281DRAFT_04386 and H281DRAFT_04387 are separated by 32 nucleotides H281DRAFT_04384: H281DRAFT_04384 - ElaA protein, at 98,163 to 98,675 _04384 H281DRAFT_04385: H281DRAFT_04385 - putative membrane protein, at 98,753 to 99,649 _04385 H281DRAFT_04386: H281DRAFT_04386 - hypothetical protein, at 99,668 to 100,117 _04386 H281DRAFT_04387: H281DRAFT_04387 - protein SCO1/2, at 100,150 to 100,707 _04387 Position (kb) 99 100 101Strain fitness (log2 ratio) -2 -1 0 1 2at 99.003 kb on + strand, within H281DRAFT_04385at 99.006 kb on - strand, within H281DRAFT_04385at 99.006 kb on - strand, within H281DRAFT_04385at 99.006 kb on - strand, within H281DRAFT_04385at 99.006 kb on - strand, within H281DRAFT_04385at 99.006 kb on - strand, within H281DRAFT_04385at 99.006 kb on - strand, within H281DRAFT_04385at 99.237 kb on + strand, within H281DRAFT_04385at 99.237 kb on + strand, within H281DRAFT_04385at 99.237 kb on + strand, within H281DRAFT_04385at 99.303 kb on - strand, within H281DRAFT_04385at 99.468 kb on + strand, within H281DRAFT_04385at 99.495 kb on + strand, within H281DRAFT_04385at 99.495 kb on + strand, within H281DRAFT_04385at 99.496 kb on - strand, within H281DRAFT_04385at 99.496 kb on - strand, within H281DRAFT_04385at 99.496 kb on - strand, within H281DRAFT_04385at 99.496 kb on - strand, within H281DRAFT_04385at 99.669 kb on + strandat 99.669 kb on + strandat 99.669 kb on + strandat 99.670 kb on - strandat 99.670 kb on - strandat 99.670 kb on - strandat 99.670 kb on - strandat 99.746 kb on + strand, within H281DRAFT_04386at 99.746 kb on + strand, within H281DRAFT_04386at 99.746 kb on + strandat 99.747 kb on - strand, within H281DRAFT_04386at 99.975 kb on + strand, within H281DRAFT_04386at 100.111 kb on + strandat 100.111 kb on + strandat 100.112 kb on - strandat 100.253 kb on + strand, within H281DRAFT_04387at 100.253 kb on + strand, within H281DRAFT_04387at 100.254 kb on - strand, within H281DRAFT_04387at 100.254 kb on - strand, within H281DRAFT_04387at 100.266 kb on + strand, within H281DRAFT_04387at 100.266 kb on + strandat 100.266 kb on + strand, within H281DRAFT_04387at 100.267 kb on - strand, within H281DRAFT_04387at 100.267 kb on - strand, within H281DRAFT_04387at 100.267 kb on - strand, within H281DRAFT_04387at 100.280 kb on + strand, within H281DRAFT_04387at 100.280 kb on + strand, within H281DRAFT_04387at 100.404 kb on - strand, within H281DRAFT_04387at 100.556 kb on + strand, within H281DRAFT_04387at 100.825 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
99,003 + H281DRAFT_04385 0.28 +0.4
99,006 - H281DRAFT_04385 0.28 -0.7
99,006 - H281DRAFT_04385 0.28 +0.2
99,006 - H281DRAFT_04385 0.28 -0.2
99,006 - H281DRAFT_04385 0.28 -0.2
99,006 - H281DRAFT_04385 0.28 +0.5
99,006 - H281DRAFT_04385 0.28 +0.5
99,237 + H281DRAFT_04385 0.54 +0.1
99,237 + H281DRAFT_04385 0.54 +0.3
99,237 + H281DRAFT_04385 0.54 +0.2
99,303 - H281DRAFT_04385 0.61 -0.2
99,468 + H281DRAFT_04385 0.80 -0.5
99,495 + H281DRAFT_04385 0.83 +0.2
99,495 + H281DRAFT_04385 0.83 -0.7
99,496 - H281DRAFT_04385 0.83 -0.9
99,496 - H281DRAFT_04385 0.83 +1.1
99,496 - H281DRAFT_04385 0.83 -0.2
99,496 - H281DRAFT_04385 0.83 -0.2
99,669 + +0.3
99,669 + +0.3
99,669 + -1.2
99,670 - -0.1
99,670 - +1.0
99,670 - +0.2
99,670 - +0.4
99,746 + H281DRAFT_04386 0.17 -2.2
99,746 + H281DRAFT_04386 0.17 -0.8
99,746 + -2.1
99,747 - H281DRAFT_04386 0.18 -2.7
99,975 + H281DRAFT_04386 0.68 -0.6
100,111 + +0.4
100,111 + +0.1
100,112 - +0.6
100,253 + H281DRAFT_04387 0.18 -2.3
100,253 + H281DRAFT_04387 0.18 +0.1
100,254 - H281DRAFT_04387 0.19 +0.4
100,254 - H281DRAFT_04387 0.19 +0.6
100,266 + H281DRAFT_04387 0.21 -1.3
100,266 + +0.4
100,266 + H281DRAFT_04387 0.21 +0.7
100,267 - H281DRAFT_04387 0.21 -0.6
100,267 - H281DRAFT_04387 0.21 +0.9
100,267 - H281DRAFT_04387 0.21 +0.8
100,280 + H281DRAFT_04387 0.23 -0.3
100,280 + H281DRAFT_04387 0.23 -0.8
100,404 - H281DRAFT_04387 0.46 +1.1
100,556 + H281DRAFT_04387 0.73 +2.3
100,825 + +0.7

Or see this region's nucleotide sequence