Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04290

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04289 and H281DRAFT_04290 are separated by 21 nucleotidesH281DRAFT_04290 and H281DRAFT_04291 are separated by 241 nucleotides H281DRAFT_04289: H281DRAFT_04289 - DNA repair photolyase, at 5,295 to 6,440 _04289 H281DRAFT_04290: H281DRAFT_04290 - TM2 domain-containing membrane protein YozV, at 6,462 to 6,929 _04290 H281DRAFT_04291: H281DRAFT_04291 - hypothetical protein, at 7,171 to 8,340 _04291 Position (kb) 6 7Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5.471 kb on + strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.579 kb on + strand, within H281DRAFT_04289at 5.579 kb on + strand, within H281DRAFT_04289at 5.579 kb on + strand, within H281DRAFT_04289at 5.579 kb on + strandat 5.579 kb on + strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.583 kb on + strand, within H281DRAFT_04289at 5.583 kb on + strand, within H281DRAFT_04289at 5.584 kb on - strand, within H281DRAFT_04289at 5.610 kb on + strand, within H281DRAFT_04289at 5.610 kb on + strand, within H281DRAFT_04289at 5.610 kb on + strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.653 kb on - strand, within H281DRAFT_04289at 5.706 kb on + strand, within H281DRAFT_04289at 5.802 kb on - strand, within H281DRAFT_04289at 5.802 kb on - strand, within H281DRAFT_04289at 5.876 kb on + strandat 5.897 kb on + strand, within H281DRAFT_04289at 5.897 kb on + strand, within H281DRAFT_04289at 5.919 kb on - strand, within H281DRAFT_04289at 5.923 kb on + strand, within H281DRAFT_04289at 5.923 kb on + strand, within H281DRAFT_04289at 5.924 kb on - strand, within H281DRAFT_04289at 5.942 kb on + strand, within H281DRAFT_04289at 6.117 kb on + strand, within H281DRAFT_04289at 6.118 kb on - strand, within H281DRAFT_04289at 6.118 kb on - strand, within H281DRAFT_04289at 6.119 kb on + strand, within H281DRAFT_04289at 6.233 kb on + strand, within H281DRAFT_04289at 6.233 kb on + strand, within H281DRAFT_04289at 6.234 kb on - strand, within H281DRAFT_04289at 6.241 kb on - strand, within H281DRAFT_04289at 6.363 kb on - strandat 6.439 kb on - strandat 6.506 kb on - strandat 6.582 kb on + strand, within H281DRAFT_04290at 6.583 kb on - strand, within H281DRAFT_04290at 6.583 kb on - strand, within H281DRAFT_04290at 6.662 kb on - strand, within H281DRAFT_04290at 6.826 kb on + strand, within H281DRAFT_04290at 6.826 kb on + strand, within H281DRAFT_04290at 6.832 kb on + strand, within H281DRAFT_04290at 6.832 kb on + strand, within H281DRAFT_04290at 6.885 kb on - strandat 6.885 kb on - strandat 6.885 kb on - strandat 6.902 kb on - strandat 6.931 kb on + strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.946 kb on + strandat 6.946 kb on + strandat 7.024 kb on + strandat 7.024 kb on + strandat 7.025 kb on - strandat 7.025 kb on - strandat 7.057 kb on - strandat 7.184 kb on + strandat 7.184 kb on + strandat 7.185 kb on - strandat 7.185 kb on - strandat 7.185 kb on - strandat 7.196 kb on + strandat 7.196 kb on + strandat 7.197 kb on - strandat 7.197 kb on - strandat 7.197 kb on - strandat 7.200 kb on + strandat 7.200 kb on + strandat 7.200 kb on + strandat 7.201 kb on - strandat 7.212 kb on - strandat 7.225 kb on - strandat 7.451 kb on + strand, within H281DRAFT_04291at 7.451 kb on + strand, within H281DRAFT_04291at 7.451 kb on + strand, within H281DRAFT_04291at 7.451 kb on + strand, within H281DRAFT_04291at 7.452 kb on - strand, within H281DRAFT_04291at 7.452 kb on - strand, within H281DRAFT_04291at 7.486 kb on + strand, within H281DRAFT_04291at 7.486 kb on + strand, within H281DRAFT_04291at 7.486 kb on + strand, within H281DRAFT_04291at 7.487 kb on - strand, within H281DRAFT_04291at 7.487 kb on - strand, within H281DRAFT_04291at 7.487 kb on - strand, within H281DRAFT_04291at 7.487 kb on - strand, within H281DRAFT_04291at 7.506 kb on + strand, within H281DRAFT_04291at 7.568 kb on + strand, within H281DRAFT_04291at 7.666 kb on + strandat 7.666 kb on + strand, within H281DRAFT_04291at 7.666 kb on + strand, within H281DRAFT_04291at 7.666 kb on + strand, within H281DRAFT_04291at 7.667 kb on - strand, within H281DRAFT_04291at 7.667 kb on - strand, within H281DRAFT_04291at 7.667 kb on - strand, within H281DRAFT_04291at 7.711 kb on + strand, within H281DRAFT_04291at 7.711 kb on + strand, within H281DRAFT_04291at 7.711 kb on + strand, within H281DRAFT_04291at 7.711 kb on + strand, within H281DRAFT_04291at 7.712 kb on - strand, within H281DRAFT_04291at 7.712 kb on - strand, within H281DRAFT_04291at 7.712 kb on - strand, within H281DRAFT_04291at 7.800 kb on + strand, within H281DRAFT_04291at 7.800 kb on + strand, within H281DRAFT_04291at 7.823 kb on + strand, within H281DRAFT_04291at 7.823 kb on + strand, within H281DRAFT_04291at 7.824 kb on - strand, within H281DRAFT_04291at 7.824 kb on - strand, within H281DRAFT_04291at 7.897 kb on + strand, within H281DRAFT_04291at 7.897 kb on + strand, within H281DRAFT_04291at 7.898 kb on - strand, within H281DRAFT_04291at 7.921 kb on - strand, within H281DRAFT_04291at 7.921 kb on - strand, within H281DRAFT_04291

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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5,471 + H281DRAFT_04289 0.15 -0.2
5,472 - H281DRAFT_04289 0.15 -0.4
5,472 - H281DRAFT_04289 0.15 -0.5
5,472 - H281DRAFT_04289 0.15 -1.5
5,516 + H281DRAFT_04289 0.19 +0.3
5,516 + H281DRAFT_04289 0.19 +0.1
5,516 + H281DRAFT_04289 0.19 +0.2
5,516 + H281DRAFT_04289 0.19 -0.2
5,517 - H281DRAFT_04289 0.19 -0.4
5,517 - H281DRAFT_04289 0.19 -0.8
5,517 - H281DRAFT_04289 0.19 +0.0
5,517 - H281DRAFT_04289 0.19 +0.3
5,579 + H281DRAFT_04289 0.25 -0.1
5,579 + H281DRAFT_04289 0.25 -0.1
5,579 + H281DRAFT_04289 0.25 +0.4
5,579 + -1.7
5,579 + H281DRAFT_04289 0.25 -0.0
5,580 - H281DRAFT_04289 0.25 +0.3
5,580 - H281DRAFT_04289 0.25 -0.2
5,580 - H281DRAFT_04289 0.25 -0.2
5,580 - H281DRAFT_04289 0.25 -1.5
5,583 + H281DRAFT_04289 0.25 +0.1
5,583 + H281DRAFT_04289 0.25 -1.6
5,584 - H281DRAFT_04289 0.25 -0.9
5,610 + H281DRAFT_04289 0.27 +0.5
5,610 + H281DRAFT_04289 0.27 +0.6
5,610 + H281DRAFT_04289 0.27 -1.1
5,611 - H281DRAFT_04289 0.28 +1.1
5,611 - H281DRAFT_04289 0.28 +0.4
5,611 - H281DRAFT_04289 0.28 -0.4
5,611 - H281DRAFT_04289 0.28 -2.6
5,652 + H281DRAFT_04289 0.31 -1.0
5,652 + H281DRAFT_04289 0.31 -0.5
5,652 + H281DRAFT_04289 0.31 +0.3
5,652 + H281DRAFT_04289 0.31 -0.4
5,652 + H281DRAFT_04289 0.31 -0.9
5,652 + H281DRAFT_04289 0.31 -0.0
5,653 - H281DRAFT_04289 0.31 -0.1
5,706 + H281DRAFT_04289 0.36 -3.5
5,802 - H281DRAFT_04289 0.44 -0.5
5,802 - H281DRAFT_04289 0.44 -0.3
5,876 + -0.4
5,897 + H281DRAFT_04289 0.53 +0.3
5,897 + H281DRAFT_04289 0.53 +0.5
5,919 - H281DRAFT_04289 0.54 -0.3
5,923 + H281DRAFT_04289 0.55 +0.6
5,923 + H281DRAFT_04289 0.55 -1.1
5,924 - H281DRAFT_04289 0.55 +0.0
5,942 + H281DRAFT_04289 0.56 -0.3
6,117 + H281DRAFT_04289 0.72 -0.8
6,118 - H281DRAFT_04289 0.72 +0.2
6,118 - H281DRAFT_04289 0.72 -0.1
6,119 + H281DRAFT_04289 0.72 +1.6
6,233 + H281DRAFT_04289 0.82 +0.2
6,233 + H281DRAFT_04289 0.82 +0.2
6,234 - H281DRAFT_04289 0.82 +1.0
6,241 - H281DRAFT_04289 0.83 -0.0
6,363 - +0.4
6,439 - -0.8
6,506 - +0.3
6,582 + H281DRAFT_04290 0.26 +0.0
6,583 - H281DRAFT_04290 0.26 -0.4
6,583 - H281DRAFT_04290 0.26 -2.8
6,662 - H281DRAFT_04290 0.43 +1.1
6,826 + H281DRAFT_04290 0.78 -0.6
6,826 + H281DRAFT_04290 0.78 -1.7
6,832 + H281DRAFT_04290 0.79 -0.3
6,832 + H281DRAFT_04290 0.79 -2.0
6,885 - -0.9
6,885 - -1.2
6,885 - -0.7
6,902 - -0.4
6,931 + -0.2
6,932 - -0.3
6,932 - +0.7
6,932 - +0.2
6,932 - +0.1
6,932 - +0.3
6,932 - +0.4
6,932 - +0.4
6,946 + -0.4
6,946 + +0.3
7,024 + +0.2
7,024 + +0.2
7,025 - +0.6
7,025 - +0.3
7,057 - -0.8
7,184 + -1.9
7,184 + +0.3
7,185 - -0.1
7,185 - -0.2
7,185 - +0.1
7,196 + +0.3
7,196 + -1.2
7,197 - +0.2
7,197 - -0.8
7,197 - -0.7
7,200 + +0.1
7,200 + +1.5
7,200 + -1.2
7,201 - -1.2
7,212 - -0.9
7,225 - -0.0
7,451 + H281DRAFT_04291 0.24 -0.3
7,451 + H281DRAFT_04291 0.24 +0.5
7,451 + H281DRAFT_04291 0.24 +0.4
7,451 + H281DRAFT_04291 0.24 -0.2
7,452 - H281DRAFT_04291 0.24 +0.3
7,452 - H281DRAFT_04291 0.24 -1.7
7,486 + H281DRAFT_04291 0.27 -0.7
7,486 + H281DRAFT_04291 0.27 -1.1
7,486 + H281DRAFT_04291 0.27 -0.6
7,487 - H281DRAFT_04291 0.27 +0.2
7,487 - H281DRAFT_04291 0.27 -0.6
7,487 - H281DRAFT_04291 0.27 +0.4
7,487 - H281DRAFT_04291 0.27 -0.2
7,506 + H281DRAFT_04291 0.29 +2.1
7,568 + H281DRAFT_04291 0.34 +0.4
7,666 + -0.4
7,666 + H281DRAFT_04291 0.42 +0.4
7,666 + H281DRAFT_04291 0.42 +0.7
7,666 + H281DRAFT_04291 0.42 +0.4
7,667 - H281DRAFT_04291 0.42 +0.5
7,667 - H281DRAFT_04291 0.42 +0.2
7,667 - H281DRAFT_04291 0.42 -1.2
7,711 + H281DRAFT_04291 0.46 +0.5
7,711 + H281DRAFT_04291 0.46 -1.1
7,711 + H281DRAFT_04291 0.46 +0.6
7,711 + H281DRAFT_04291 0.46 +0.2
7,712 - H281DRAFT_04291 0.46 +0.4
7,712 - H281DRAFT_04291 0.46 +0.0
7,712 - H281DRAFT_04291 0.46 -0.9
7,800 + H281DRAFT_04291 0.54 +0.9
7,800 + H281DRAFT_04291 0.54 -0.3
7,823 + H281DRAFT_04291 0.56 +0.2
7,823 + H281DRAFT_04291 0.56 +0.1
7,824 - H281DRAFT_04291 0.56 -0.0
7,824 - H281DRAFT_04291 0.56 +0.4
7,897 + H281DRAFT_04291 0.62 -0.8
7,897 + H281DRAFT_04291 0.62 -0.4
7,898 - H281DRAFT_04291 0.62 +0.6
7,921 - H281DRAFT_04291 0.64 +0.2
7,921 - H281DRAFT_04291 0.64 +0.9

Or see this region's nucleotide sequence