Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03999

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_03998 and H281DRAFT_03999 are separated by 572 nucleotidesH281DRAFT_03999 and H281DRAFT_04000 are separated by 99 nucleotidesH281DRAFT_04000 and H281DRAFT_04001 are separated by 69 nucleotidesH281DRAFT_04001 and H281DRAFT_04002 are separated by 79 nucleotides H281DRAFT_03998: H281DRAFT_03998 - hypothetical protein, at 103,031 to 103,279 _03998 H281DRAFT_03999: H281DRAFT_03999 - porin, GBP family, at 103,852 to 104,997 _03999 H281DRAFT_04000: H281DRAFT_04000 - transcription elongation factor GreB, at 105,097 to 105,717 _04000 H281DRAFT_04001: H281DRAFT_04001 - tRNA_Arg_ACG, at 105,787 to 105,863 _04001 H281DRAFT_04002: H281DRAFT_04002 - tRNA_Arg_ACG, at 105,943 to 106,019 _04002 Position (kb) 103 104 105Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 102.856 kb on + strandat 102.891 kb on + strandat 102.905 kb on + strandat 102.947 kb on + strandat 102.947 kb on + strandat 102.947 kb on + strandat 102.947 kb on + strandat 102.947 kb on + strandat 102.948 kb on - strandat 102.948 kb on - strandat 103.064 kb on - strand, within H281DRAFT_03998at 103.064 kb on - strand, within H281DRAFT_03998at 103.064 kb on - strand, within H281DRAFT_03998at 103.208 kb on + strand, within H281DRAFT_03998at 103.208 kb on + strand, within H281DRAFT_03998at 103.208 kb on + strand, within H281DRAFT_03998at 103.209 kb on - strand, within H281DRAFT_03998at 103.449 kb on + strandat 103.451 kb on + strandat 103.452 kb on - strandat 103.458 kb on + strandat 103.517 kb on - strandat 103.602 kb on - strandat 103.602 kb on - strandat 103.752 kb on - strandat 103.752 kb on - strandat 103.752 kb on - strandat 103.777 kb on + strandat 103.777 kb on + strandat 103.930 kb on + strandat 103.931 kb on - strandat 103.953 kb on + strandat 103.953 kb on + strandat 103.954 kb on - strandat 103.954 kb on - strandat 103.957 kb on + strandat 103.957 kb on + strandat 103.957 kb on + strandat 103.957 kb on + strandat 103.958 kb on - strandat 104.197 kb on + strand, within H281DRAFT_03999at 104.216 kb on - strand, within H281DRAFT_03999at 104.327 kb on - strand, within H281DRAFT_03999at 104.341 kb on + strand, within H281DRAFT_03999at 104.368 kb on + strand, within H281DRAFT_03999at 104.368 kb on + strand, within H281DRAFT_03999at 104.368 kb on + strand, within H281DRAFT_03999at 104.368 kb on + strand, within H281DRAFT_03999at 104.369 kb on - strand, within H281DRAFT_03999at 104.413 kb on + strand, within H281DRAFT_03999at 104.413 kb on + strand, within H281DRAFT_03999at 104.431 kb on + strand, within H281DRAFT_03999at 104.431 kb on + strand, within H281DRAFT_03999at 104.432 kb on - strand, within H281DRAFT_03999at 104.432 kb on - strand, within H281DRAFT_03999at 104.464 kb on + strand, within H281DRAFT_03999at 104.465 kb on - strand, within H281DRAFT_03999at 104.465 kb on - strand, within H281DRAFT_03999at 104.465 kb on - strand, within H281DRAFT_03999at 104.465 kb on - strand, within H281DRAFT_03999at 104.541 kb on + strand, within H281DRAFT_03999at 104.541 kb on + strand, within H281DRAFT_03999at 104.541 kb on + strand, within H281DRAFT_03999at 104.541 kb on + strand, within H281DRAFT_03999at 104.541 kb on + strand, within H281DRAFT_03999at 104.588 kb on - strand, within H281DRAFT_03999at 104.723 kb on - strand, within H281DRAFT_03999at 104.723 kb on - strand, within H281DRAFT_03999at 104.776 kb on + strand, within H281DRAFT_03999at 104.776 kb on + strand, within H281DRAFT_03999at 104.777 kb on - strand, within H281DRAFT_03999at 104.782 kb on + strand, within H281DRAFT_03999at 104.782 kb on + strand, within H281DRAFT_03999at 104.782 kb on + strand, within H281DRAFT_03999at 104.782 kb on + strand, within H281DRAFT_03999at 104.872 kb on + strand, within H281DRAFT_03999at 104.887 kb on + strandat 104.995 kb on + strandat 104.996 kb on - strandat 105.098 kb on + strandat 105.098 kb on + strandat 105.098 kb on + strandat 105.098 kb on + strandat 105.098 kb on + strandat 105.099 kb on - strandat 105.099 kb on - strandat 105.099 kb on - strandat 105.099 kb on - strandat 105.122 kb on + strandat 105.123 kb on - strandat 105.167 kb on + strand, within H281DRAFT_04000at 105.167 kb on + strand, within H281DRAFT_04000at 105.168 kb on - strand, within H281DRAFT_04000at 105.168 kb on - strand, within H281DRAFT_04000at 105.168 kb on - strand, within H281DRAFT_04000at 105.415 kb on + strand, within H281DRAFT_04000at 105.415 kb on + strand, within H281DRAFT_04000at 105.415 kb on + strand, within H281DRAFT_04000at 105.415 kb on + strand, within H281DRAFT_04000at 105.416 kb on - strand, within H281DRAFT_04000at 105.416 kb on - strand, within H281DRAFT_04000at 105.440 kb on + strand, within H281DRAFT_04000at 105.446 kb on + strand, within H281DRAFT_04000at 105.446 kb on + strand, within H281DRAFT_04000at 105.446 kb on + strand, within H281DRAFT_04000at 105.447 kb on - strand, within H281DRAFT_04000at 105.575 kb on + strand, within H281DRAFT_04000at 105.575 kb on + strand, within H281DRAFT_04000at 105.575 kb on + strand, within H281DRAFT_04000at 105.575 kb on + strand, within H281DRAFT_04000at 105.576 kb on - strand, within H281DRAFT_04000at 105.576 kb on - strand, within H281DRAFT_04000at 105.676 kb on + strandat 105.676 kb on + strandat 105.677 kb on - strandat 105.677 kb on - strandat 105.707 kb on + strandat 105.740 kb on - strandat 105.812 kb on + strand, within H281DRAFT_04001at 105.896 kb on + strandat 105.921 kb on + strandat 105.964 kb on - strand, within H281DRAFT_04002at 105.969 kb on - strand, within H281DRAFT_04002

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
102,856 + +1.2
102,891 + +0.7
102,905 + +0.8
102,947 + +0.9
102,947 + +0.2
102,947 + +1.1
102,947 + +0.3
102,947 + +0.5
102,948 - +0.3
102,948 - -0.2
103,064 - H281DRAFT_03998 0.13 +0.3
103,064 - H281DRAFT_03998 0.13 +1.4
103,064 - H281DRAFT_03998 0.13 +0.9
103,208 + H281DRAFT_03998 0.71 +0.1
103,208 + H281DRAFT_03998 0.71 +0.3
103,208 + H281DRAFT_03998 0.71 +1.8
103,209 - H281DRAFT_03998 0.71 -0.1
103,449 + -1.8
103,451 + +0.4
103,452 - -0.3
103,458 + -0.1
103,517 - -0.7
103,602 - -0.1
103,602 - -2.1
103,752 - +0.2
103,752 - -0.5
103,752 - -0.6
103,777 + +0.5
103,777 + +0.3
103,930 + +0.2
103,931 - +0.4
103,953 + +0.1
103,953 + +0.4
103,954 - -2.2
103,954 - -0.2
103,957 + -0.4
103,957 + +0.5
103,957 + -1.2
103,957 + +0.1
103,958 - +0.5
104,197 + H281DRAFT_03999 0.30 -0.6
104,216 - H281DRAFT_03999 0.32 -1.3
104,327 - H281DRAFT_03999 0.41 -0.1
104,341 + H281DRAFT_03999 0.43 -3.4
104,368 + H281DRAFT_03999 0.45 +0.0
104,368 + H281DRAFT_03999 0.45 -0.5
104,368 + H281DRAFT_03999 0.45 -0.8
104,368 + H281DRAFT_03999 0.45 -1.1
104,369 - H281DRAFT_03999 0.45 -2.1
104,413 + H281DRAFT_03999 0.49 +2.5
104,413 + H281DRAFT_03999 0.49 -0.5
104,431 + H281DRAFT_03999 0.51 -0.8
104,431 + H281DRAFT_03999 0.51 -1.0
104,432 - H281DRAFT_03999 0.51 -0.6
104,432 - H281DRAFT_03999 0.51 +0.7
104,464 + H281DRAFT_03999 0.53 +0.1
104,465 - H281DRAFT_03999 0.53 -0.4
104,465 - H281DRAFT_03999 0.53 +0.2
104,465 - H281DRAFT_03999 0.53 -0.7
104,465 - H281DRAFT_03999 0.53 +0.8
104,541 + H281DRAFT_03999 0.60 +0.6
104,541 + H281DRAFT_03999 0.60 +0.9
104,541 + H281DRAFT_03999 0.60 +0.7
104,541 + H281DRAFT_03999 0.60 +0.4
104,541 + H281DRAFT_03999 0.60 +0.4
104,588 - H281DRAFT_03999 0.64 +0.4
104,723 - H281DRAFT_03999 0.76 -0.5
104,723 - H281DRAFT_03999 0.76 -0.6
104,776 + H281DRAFT_03999 0.81 +0.0
104,776 + H281DRAFT_03999 0.81 +0.5
104,777 - H281DRAFT_03999 0.81 +0.5
104,782 + H281DRAFT_03999 0.81 +0.3
104,782 + H281DRAFT_03999 0.81 -0.9
104,782 + H281DRAFT_03999 0.81 +0.5
104,782 + H281DRAFT_03999 0.81 +0.3
104,872 + H281DRAFT_03999 0.89 +0.2
104,887 + -1.8
104,995 + -0.1
104,996 - -1.3
105,098 + -1.1
105,098 + +1.3
105,098 + -0.5
105,098 + -0.4
105,098 + +0.4
105,099 - -0.1
105,099 - +0.4
105,099 - +0.3
105,099 - -0.4
105,122 + -1.0
105,123 - +0.3
105,167 + H281DRAFT_04000 0.11 -0.1
105,167 + H281DRAFT_04000 0.11 -0.3
105,168 - H281DRAFT_04000 0.11 +0.2
105,168 - H281DRAFT_04000 0.11 -1.2
105,168 - H281DRAFT_04000 0.11 +0.6
105,415 + H281DRAFT_04000 0.51 +0.0
105,415 + H281DRAFT_04000 0.51 +0.2
105,415 + H281DRAFT_04000 0.51 +0.3
105,415 + H281DRAFT_04000 0.51 -0.8
105,416 - H281DRAFT_04000 0.51 +0.2
105,416 - H281DRAFT_04000 0.51 -0.5
105,440 + H281DRAFT_04000 0.55 -0.1
105,446 + H281DRAFT_04000 0.56 -0.1
105,446 + H281DRAFT_04000 0.56 -0.4
105,446 + H281DRAFT_04000 0.56 -0.8
105,447 - H281DRAFT_04000 0.56 -0.1
105,575 + H281DRAFT_04000 0.77 -0.2
105,575 + H281DRAFT_04000 0.77 -0.8
105,575 + H281DRAFT_04000 0.77 -0.3
105,575 + H281DRAFT_04000 0.77 +0.4
105,576 - H281DRAFT_04000 0.77 -0.4
105,576 - H281DRAFT_04000 0.77 -1.3
105,676 + +0.8
105,676 + +0.4
105,677 - +0.4
105,677 - -0.4
105,707 + +0.8
105,740 - -2.9
105,812 + H281DRAFT_04001 0.32 -2.1
105,896 + +0.5
105,921 + +0.3
105,964 - H281DRAFT_04002 0.27 +0.7
105,969 - H281DRAFT_04002 0.34 +0.4

Or see this region's nucleotide sequence