Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03419

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03418 and H281DRAFT_03419 are separated by 191 nucleotidesH281DRAFT_03419 and H281DRAFT_03420 are separated by 2 nucleotides H281DRAFT_03418: H281DRAFT_03418 - 3-hydroxyisobutyrate dehydrogenase, at 491,792 to 492,694 _03418 H281DRAFT_03419: H281DRAFT_03419 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.-), at 492,886 to 493,569 _03419 H281DRAFT_03420: H281DRAFT_03420 - 4-oxalomesaconate hydratase (EC 4.2.1.83), at 493,572 to 494,597 _03420 Position (kb) 492 493 494Strain fitness (log2 ratio) -1 0 1at 492.007 kb on - strand, within H281DRAFT_03418at 492.316 kb on - strand, within H281DRAFT_03418at 492.935 kb on + strandat 492.936 kb on - strandat 492.936 kb on - strandat 493.428 kb on - strand, within H281DRAFT_03419at 493.443 kb on - strand, within H281DRAFT_03419at 493.779 kb on + strand, within H281DRAFT_03420at 493.780 kb on - strand, within H281DRAFT_03420at 493.780 kb on - strand, within H281DRAFT_03420at 493.787 kb on + strand, within H281DRAFT_03420at 494.018 kb on - strand, within H281DRAFT_03420at 494.087 kb on - strand, within H281DRAFT_03420

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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492,007 - H281DRAFT_03418 0.24 +0.9
492,316 - H281DRAFT_03418 0.58 +0.7
492,935 + -0.6
492,936 - -0.2
492,936 - -0.1
493,428 - H281DRAFT_03419 0.79 +1.7
493,443 - H281DRAFT_03419 0.81 -0.2
493,779 + H281DRAFT_03420 0.20 +0.6
493,780 - H281DRAFT_03420 0.20 -0.8
493,780 - H281DRAFT_03420 0.20 -0.2
493,787 + H281DRAFT_03420 0.21 -0.4
494,018 - H281DRAFT_03420 0.43 +0.4
494,087 - H281DRAFT_03420 0.50 +1.6

Or see this region's nucleotide sequence