Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01712

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01711 and H281DRAFT_01712 are separated by 271 nucleotidesH281DRAFT_01712 and H281DRAFT_01713 are separated by 198 nucleotides H281DRAFT_01711: H281DRAFT_01711 - Na/Pi-cotransporter, at 596,837 to 597,793 _01711 H281DRAFT_01712: H281DRAFT_01712 - polyphosphate kinase 2, PA0141 family, at 598,065 to 598,889 _01712 H281DRAFT_01713: H281DRAFT_01713 - Lysophospholipase, at 599,088 to 600,695 _01713 Position (kb) 598 599Strain fitness (log2 ratio) -1 0 1at 597.146 kb on - strand, within H281DRAFT_01711at 597.885 kb on + strandat 597.890 kb on - strandat 598.066 kb on + strandat 598.100 kb on - strandat 598.189 kb on - strandat 598.306 kb on + strand, within H281DRAFT_01712at 598.420 kb on + strand, within H281DRAFT_01712at 598.543 kb on + strand, within H281DRAFT_01712at 598.610 kb on - strand, within H281DRAFT_01712at 598.743 kb on + strand, within H281DRAFT_01712at 598.744 kb on - strand, within H281DRAFT_01712at 598.744 kb on - strand, within H281DRAFT_01712at 598.744 kb on - strand, within H281DRAFT_01712at 598.934 kb on - strandat 598.934 kb on - strandat 598.953 kb on - strandat 598.960 kb on + strandat 599.054 kb on - strandat 599.105 kb on + strandat 599.179 kb on - strandat 599.536 kb on + strand, within H281DRAFT_01713

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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597,146 - H281DRAFT_01711 0.32 +0.9
597,885 + +1.1
597,890 - -0.7
598,066 + +0.4
598,100 - +0.3
598,189 - +0.3
598,306 + H281DRAFT_01712 0.29 +0.1
598,420 + H281DRAFT_01712 0.43 +0.5
598,543 + H281DRAFT_01712 0.58 -0.2
598,610 - H281DRAFT_01712 0.66 +0.2
598,743 + H281DRAFT_01712 0.82 -0.4
598,744 - H281DRAFT_01712 0.82 -0.8
598,744 - H281DRAFT_01712 0.82 +0.1
598,744 - H281DRAFT_01712 0.82 +0.1
598,934 - -1.4
598,934 - -1.0
598,953 - -0.2
598,960 + +0.8
599,054 - -0.6
599,105 + -1.0
599,179 - +0.7
599,536 + H281DRAFT_01713 0.28 +0.7

Or see this region's nucleotide sequence