Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01171

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01170 and H281DRAFT_01171 overlap by 4 nucleotidesH281DRAFT_01171 and H281DRAFT_01172 are separated by 220 nucleotides H281DRAFT_01170: H281DRAFT_01170 - Alkyl sulfatase BDS1, metallo-beta-lactamase superfamily, at 1,904 to 3,889 _01170 H281DRAFT_01171: H281DRAFT_01171 - alcohol dehydrogenase, propanol-preferring, at 3,886 to 4,956 _01171 H281DRAFT_01172: H281DRAFT_01172 - NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family, at 5,177 to 5,965 _01172 Position (kb) 3 4 5Strain fitness (log2 ratio) -1 0 1at 3.396 kb on + strand, within H281DRAFT_01170at 3.586 kb on + strand, within H281DRAFT_01170at 3.586 kb on + strand, within H281DRAFT_01170at 3.587 kb on - strand, within H281DRAFT_01170at 3.700 kb on - strandat 4.112 kb on - strand, within H281DRAFT_01171at 4.149 kb on - strand, within H281DRAFT_01171at 4.347 kb on + strand, within H281DRAFT_01171at 4.613 kb on - strand, within H281DRAFT_01171at 4.971 kb on + strandat 4.971 kb on + strandat 4.972 kb on - strandat 4.976 kb on - strandat 5.037 kb on + strandat 5.038 kb on - strandat 5.294 kb on - strand, within H281DRAFT_01172

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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3,396 + H281DRAFT_01170 0.75 +0.7
3,586 + H281DRAFT_01170 0.85 -0.5
3,586 + H281DRAFT_01170 0.85 -0.1
3,587 - H281DRAFT_01170 0.85 +0.4
3,700 - +1.1
4,112 - H281DRAFT_01171 0.21 +0.9
4,149 - H281DRAFT_01171 0.25 +0.4
4,347 + H281DRAFT_01171 0.43 +0.7
4,613 - H281DRAFT_01171 0.68 -0.3
4,971 + +0.9
4,971 + -0.1
4,972 - +0.1
4,976 - +0.6
5,037 + -0.1
5,038 - -0.3
5,294 - H281DRAFT_01172 0.15 +1.4

Or see this region's nucleotide sequence