Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0029 and DVUA0030 are separated by 522 nucleotides DVUA0030 and DVUA0031 are separated by 694 nucleotides
DVUA0029: DVUA0029 - hypothetical protein (TIGR), at 32,118 to 32,798
DVUA0029
DVUA0030: DVUA0030 - hypothetical protein (TIGR), at 33,321 to 34,022
DVUA0030
DVUA0031: DVUA0031 - hypothetical protein (TIGR), at 34,717 to 35,583
DVUA0031
Position (kb) 33
34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 32.389 kb on + strand, within DVUA0029 at 32.503 kb on - strand, within DVUA0029 at 32.508 kb on + strand, within DVUA0029 at 32.528 kb on - strand, within DVUA0029 at 32.543 kb on - strand, within DVUA0029 at 32.560 kb on + strand, within DVUA0029 at 32.568 kb on - strand, within DVUA0029 at 32.662 kb on - strand, within DVUA0029 at 32.678 kb on + strand, within DVUA0029 at 32.742 kb on + strand at 32.761 kb on - strand at 32.813 kb on + strand at 32.818 kb on + strand at 32.821 kb on - strand at 32.821 kb on - strand at 32.837 kb on - strand at 32.850 kb on + strand at 32.869 kb on - strand at 32.871 kb on - strand at 32.885 kb on + strand at 32.903 kb on - strand at 32.922 kb on + strand at 32.953 kb on + strand at 33.001 kb on + strand at 33.017 kb on - strand at 33.034 kb on + strand at 33.052 kb on - strand at 33.061 kb on - strand at 33.113 kb on + strand at 33.121 kb on - strand at 33.121 kb on - strand at 33.121 kb on - strand at 33.139 kb on + strand at 33.147 kb on - strand at 33.173 kb on - strand at 33.315 kb on + strand at 33.352 kb on - strand at 33.449 kb on + strand, within DVUA0030 at 33.468 kb on + strand, within DVUA0030 at 33.494 kb on + strand, within DVUA0030 at 33.556 kb on + strand, within DVUA0030 at 33.702 kb on + strand, within DVUA0030 at 33.710 kb on - strand, within DVUA0030 at 33.726 kb on + strand, within DVUA0030 at 33.734 kb on - strand, within DVUA0030 at 33.739 kb on - strand, within DVUA0030 at 33.788 kb on + strand, within DVUA0030 at 33.796 kb on - strand, within DVUA0030 at 33.796 kb on - strand, within DVUA0030 at 33.796 kb on - strand, within DVUA0030 at 33.858 kb on - strand, within DVUA0030 at 33.928 kb on + strand, within DVUA0030 at 33.974 kb on + strand at 34.028 kb on + strand at 34.077 kb on + strand at 34.089 kb on - strand at 34.113 kb on + strand at 34.241 kb on + strand at 34.258 kb on + strand at 34.276 kb on - strand at 34.283 kb on - strand at 34.374 kb on - strand at 34.507 kb on + strand at 34.508 kb on - strand at 34.528 kb on + strand at 34.528 kb on + strand at 34.556 kb on + strand at 34.636 kb on - strand at 34.714 kb on + strand at 34.714 kb on + strand at 34.714 kb on + strand at 34.722 kb on - strand at 34.745 kb on + strand at 34.792 kb on - strand at 34.804 kb on + strand, within DVUA0031 at 34.835 kb on - strand, within DVUA0031 at 34.999 kb on - strand, within DVUA0031 at 35.006 kb on + strand, within DVUA0031
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM remove 32,389 + DVUA0029 0.40 -0.0 32,503 - DVUA0029 0.57 -0.7 32,508 + DVUA0029 0.57 +0.5 32,528 - DVUA0029 0.60 +0.6 32,543 - DVUA0029 0.62 +0.3 32,560 + DVUA0029 0.65 +0.2 32,568 - DVUA0029 0.66 -0.9 32,662 - DVUA0029 0.80 -2.5 32,678 + DVUA0029 0.82 -0.2 32,742 + +0.1 32,761 - +0.0 32,813 + +0.6 32,818 + -0.1 32,821 - -0.1 32,821 - -0.9 32,837 - +1.3 32,850 + -0.2 32,869 - +0.4 32,871 - -0.5 32,885 + -0.5 32,903 - +0.1 32,922 + -0.6 32,953 + +0.2 33,001 + -0.3 33,017 - +0.0 33,034 + +0.0 33,052 - +0.1 33,061 - -1.0 33,113 + -2.0 33,121 - -1.5 33,121 - -3.5 33,121 - -0.2 33,139 + -0.2 33,147 - -1.9 33,173 - -0.3 33,315 + -0.9 33,352 - +0.6 33,449 + DVUA0030 0.18 +0.1 33,468 + DVUA0030 0.21 +0.1 33,494 + DVUA0030 0.25 +0.8 33,556 + DVUA0030 0.33 -0.2 33,702 + DVUA0030 0.54 -0.3 33,710 - DVUA0030 0.55 +0.5 33,726 + DVUA0030 0.58 +0.9 33,734 - DVUA0030 0.59 +1.8 33,739 - DVUA0030 0.60 -0.3 33,788 + DVUA0030 0.67 +1.5 33,796 - DVUA0030 0.68 -0.3 33,796 - DVUA0030 0.68 +0.6 33,796 - DVUA0030 0.68 -0.3 33,858 - DVUA0030 0.76 +0.2 33,928 + DVUA0030 0.86 +1.7 33,974 + -1.2 34,028 + -0.0 34,077 + +2.5 34,089 - +0.1 34,113 + -0.1 34,241 + -0.2 34,258 + +0.1 34,276 - -0.4 34,283 - -0.2 34,374 - -0.7 34,507 + -0.2 34,508 - -0.0 34,528 + -0.3 34,528 + +0.3 34,556 + -0.3 34,636 - -1.8 34,714 + -0.4 34,714 + -0.7 34,714 + -0.4 34,722 - +0.5 34,745 + -0.1 34,792 - +0.2 34,804 + DVUA0031 0.10 +0.2 34,835 - DVUA0031 0.14 +0.3 34,999 - DVUA0031 0.33 -0.2 35,006 + DVUA0031 0.33 +0.1
Or see this region's nucleotide sequence