Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0395

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0394 and hit are separated by 227 nucleotideshit and hup-1 are separated by 27 nucleotideshup-1 and rlpA are separated by 347 nucleotides DVU0394: DVU0394 - radical SAM domain protein (TIGR), at 442,741 to 443,763 DVU0394 DVU0395: hit - HIT family protein (TIGR), at 443,991 to 444,410 hit DVU0396: hup-1 - DNA-binding protein HU (TIGR), at 444,438 to 444,725 hup-1 DVU0397: rlpA - rare lipoprotein A, putative (TIGR), at 445,073 to 445,804 rlpA Position (kb) 443 444 445Strain fitness (log2 ratio) -1 0 1at 443.812 kb on - strandat 444.050 kb on + strand, within hitat 444.050 kb on + strand, within hitat 444.053 kb on - strand, within hitat 444.058 kb on - strand, within hitat 444.176 kb on + strand, within hitat 444.234 kb on + strand, within hitat 444.242 kb on - strand, within hitat 444.242 kb on - strand, within hitat 444.394 kb on - strandat 444.857 kb on - strandat 444.871 kb on + strandat 444.980 kb on - strandat 444.985 kb on - strandat 445.134 kb on + strandat 445.168 kb on - strand, within rlpAat 445.270 kb on - strand, within rlpAat 445.290 kb on + strand, within rlpAat 445.290 kb on + strand, within rlpAat 445.300 kb on + strand, within rlpAat 445.308 kb on - strand, within rlpAat 445.377 kb on - strand, within rlpAat 445.389 kb on + strand, within rlpAat 445.397 kb on - strand, within rlpA

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
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443,812 - +0.3
444,050 + hit DVU0395 0.14 -0.8
444,050 + hit DVU0395 0.14 +0.6
444,053 - hit DVU0395 0.15 -1.3
444,058 - hit DVU0395 0.16 +0.3
444,176 + hit DVU0395 0.44 +0.6
444,234 + hit DVU0395 0.58 +1.7
444,242 - hit DVU0395 0.60 +1.2
444,242 - hit DVU0395 0.60 +0.4
444,394 - -0.2
444,857 - +0.1
444,871 + -0.1
444,980 - +0.4
444,985 - -0.2
445,134 + -0.6
445,168 - rlpA DVU0397 0.13 -1.0
445,270 - rlpA DVU0397 0.27 -0.1
445,290 + rlpA DVU0397 0.30 -0.3
445,290 + rlpA DVU0397 0.30 -0.7
445,300 + rlpA DVU0397 0.31 -0.2
445,308 - rlpA DVU0397 0.32 +1.7
445,377 - rlpA DVU0397 0.42 +1.5
445,389 + rlpA DVU0397 0.43 -0.2
445,397 - rlpA DVU0397 0.44 +0.5

Or see this region's nucleotide sequence