Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0246 and ntrX are separated by 362 nucleotides ntrX and DVU0248 are separated by 9 nucleotides
DVU0246: DVU0246 - pyruvate phosphate dikinase, PEP/pyruvate binding domain protein (TIGR), at 278,347 to 280,581
DVU0246
DVU0247: ntrX - response regulator (TIGR), at 280,944 to 281,303
ntrX
DVU0248: DVU0248 - sensory box histidine kinase, authentic point mutation (TIGR), at 281,313 to 283,421
DVU0248
Position (kb) 280
281
282 Strain fitness (log2 ratio) -2
-1
0
1
2 at 279.973 kb on - strand, within DVU0246 at 279.983 kb on - strand, within DVU0246 at 279.983 kb on - strand, within DVU0246 at 280.015 kb on + strand, within DVU0246 at 280.026 kb on + strand, within DVU0246 at 280.028 kb on + strand, within DVU0246 at 280.040 kb on + strand, within DVU0246 at 280.093 kb on + strand, within DVU0246 at 280.093 kb on + strand, within DVU0246 at 280.116 kb on - strand, within DVU0246 at 280.157 kb on + strand, within DVU0246 at 280.165 kb on - strand, within DVU0246 at 280.167 kb on + strand, within DVU0246 at 280.168 kb on - strand, within DVU0246 at 280.181 kb on + strand, within DVU0246 at 280.201 kb on - strand, within DVU0246 at 280.201 kb on - strand, within DVU0246 at 280.238 kb on + strand, within DVU0246 at 280.245 kb on + strand, within DVU0246 at 280.282 kb on - strand, within DVU0246 at 280.326 kb on - strand, within DVU0246 at 280.341 kb on + strand, within DVU0246 at 280.360 kb on - strand at 280.365 kb on + strand at 280.419 kb on - strand at 280.419 kb on - strand at 280.464 kb on - strand at 280.573 kb on + strand at 280.581 kb on - strand at 280.593 kb on - strand at 280.611 kb on + strand at 280.649 kb on - strand at 280.670 kb on - strand at 280.670 kb on - strand at 280.702 kb on + strand at 280.720 kb on + strand at 280.767 kb on - strand at 280.814 kb on - strand at 280.814 kb on - strand at 280.825 kb on - strand at 280.869 kb on - strand at 280.902 kb on + strand at 280.921 kb on + strand at 280.978 kb on + strand at 280.997 kb on + strand, within ntrX at 281.007 kb on + strand, within ntrX at 281.084 kb on + strand, within ntrX at 281.089 kb on + strand, within ntrX at 281.097 kb on - strand, within ntrX at 281.125 kb on - strand, within ntrX at 281.125 kb on - strand, within ntrX at 281.228 kb on - strand, within ntrX at 281.263 kb on + strand, within ntrX at 281.312 kb on - strand at 281.432 kb on + strand at 281.482 kb on + strand at 281.520 kb on + strand at 281.520 kb on + strand at 281.533 kb on - strand, within DVU0248 at 281.624 kb on - strand, within DVU0248 at 281.934 kb on + strand, within DVU0248 at 281.976 kb on - strand, within DVU0248 at 281.976 kb on - strand, within DVU0248 at 281.977 kb on + strand, within DVU0248 at 282.003 kb on + strand, within DVU0248 at 282.015 kb on + strand, within DVU0248 at 282.133 kb on + strand, within DVU0248 at 282.133 kb on + strand, within DVU0248 at 282.172 kb on - strand, within DVU0248 at 282.179 kb on + strand, within DVU0248 at 282.188 kb on + strand, within DVU0248 at 282.210 kb on - strand, within DVU0248 at 282.303 kb on - strand, within DVU0248
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM remove 279,973 - DVU0246 0.73 -1.4 279,983 - DVU0246 0.73 +0.3 279,983 - DVU0246 0.73 -0.5 280,015 + DVU0246 0.75 -1.4 280,026 + DVU0246 0.75 -0.7 280,028 + DVU0246 0.75 -1.2 280,040 + DVU0246 0.76 -0.4 280,093 + DVU0246 0.78 +0.0 280,093 + DVU0246 0.78 +0.1 280,116 - DVU0246 0.79 -0.5 280,157 + DVU0246 0.81 -0.5 280,165 - DVU0246 0.81 -0.8 280,167 + DVU0246 0.81 +0.3 280,168 - DVU0246 0.81 -0.7 280,181 + DVU0246 0.82 -0.3 280,201 - DVU0246 0.83 -2.0 280,201 - DVU0246 0.83 -0.8 280,238 + DVU0246 0.85 -0.9 280,245 + DVU0246 0.85 -0.9 280,282 - DVU0246 0.87 +0.2 280,326 - DVU0246 0.89 -0.8 280,341 + DVU0246 0.89 +1.9 280,360 - -0.9 280,365 + -0.9 280,419 - -0.2 280,419 - +1.3 280,464 - -0.1 280,573 + -0.6 280,581 - -0.9 280,593 - +1.0 280,611 + -1.9 280,649 - -0.3 280,670 - +0.1 280,670 - +1.1 280,702 + -1.3 280,720 + +0.2 280,767 - -1.1 280,814 - -0.9 280,814 - +1.3 280,825 - -0.8 280,869 - +0.3 280,902 + +1.6 280,921 + -1.3 280,978 + -1.0 280,997 + ntrX DVU0247 0.15 -0.8 281,007 + ntrX DVU0247 0.17 -2.3 281,084 + ntrX DVU0247 0.39 -1.7 281,089 + ntrX DVU0247 0.40 -1.0 281,097 - ntrX DVU0247 0.42 -1.5 281,125 - ntrX DVU0247 0.50 -0.1 281,125 - ntrX DVU0247 0.50 -0.4 281,228 - ntrX DVU0247 0.79 -1.0 281,263 + ntrX DVU0247 0.89 -0.7 281,312 - -0.1 281,432 + -1.4 281,482 + -1.4 281,520 + -0.1 281,520 + +0.1 281,533 - DVU0248 0.10 -0.6 281,624 - DVU0248 0.15 +0.2 281,934 + DVU0248 0.29 +0.0 281,976 - DVU0248 0.31 -0.4 281,976 - DVU0248 0.31 +0.0 281,977 + DVU0248 0.31 -0.2 282,003 + DVU0248 0.33 -0.4 282,015 + DVU0248 0.33 +1.0 282,133 + DVU0248 0.39 -1.4 282,133 + DVU0248 0.39 +0.9 282,172 - DVU0248 0.41 -0.4 282,179 + DVU0248 0.41 -0.7 282,188 + DVU0248 0.41 -0.1 282,210 - DVU0248 0.43 -0.3 282,303 - DVU0248 0.47 +1.1
Or see this region's nucleotide sequence