Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0201

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0200 and DVU0201 are separated by 8 nucleotidesDVU0201 and DVU0202 are separated by 2 nucleotidesDVU0202 and DVU0203 are separated by 20 nucleotides DVU0200: DVU0200 - major head protein (TIGR), at 245,998 to 247,002 DVU0200 DVU0201: DVU0201 - hypothetical protein (TIGR), at 247,011 to 247,331 DVU0201 DVU0202: DVU0202 - holin (TIGR), at 247,334 to 247,822 DVU0202 DVU0203: DVU0203 - conserved hypothetical protein (TIGR), at 247,843 to 248,391 DVU0203 Position (kb) 247 248Strain fitness (log2 ratio) -1 0 1 2at 246.527 kb on - strand, within DVU0200at 247.045 kb on - strand, within DVU0201at 247.045 kb on - strand, within DVU0201at 247.057 kb on + strand, within DVU0201at 247.057 kb on + strand, within DVU0201at 247.057 kb on + strand, within DVU0201at 247.059 kb on + strand, within DVU0201at 247.084 kb on - strand, within DVU0201at 247.249 kb on - strand, within DVU0201at 247.362 kb on - strandat 247.499 kb on + strand, within DVU0202at 247.499 kb on + strand, within DVU0202at 247.499 kb on + strand, within DVU0202at 247.499 kb on + strand, within DVU0202at 247.925 kb on + strand, within DVU0203at 247.925 kb on + strand, within DVU0203at 247.925 kb on + strand, within DVU0203at 247.967 kb on - strand, within DVU0203at 247.967 kb on - strand, within DVU0203

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
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246,527 - DVU0200 0.53 +0.1
247,045 - DVU0201 0.11 -0.4
247,045 - DVU0201 0.11 -0.6
247,057 + DVU0201 0.14 +0.0
247,057 + DVU0201 0.14 +1.0
247,057 + DVU0201 0.14 +2.0
247,059 + DVU0201 0.15 +0.4
247,084 - DVU0201 0.23 +0.2
247,249 - DVU0201 0.74 +0.3
247,362 - -0.0
247,499 + DVU0202 0.34 -0.1
247,499 + DVU0202 0.34 +0.4
247,499 + DVU0202 0.34 -0.6
247,499 + DVU0202 0.34 -0.2
247,925 + DVU0203 0.15 -0.3
247,925 + DVU0203 0.15 +0.8
247,925 + DVU0203 0.15 +2.1
247,967 - DVU0203 0.23 -1.1
247,967 - DVU0203 0.23 +0.2

Or see this region's nucleotide sequence