Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0034 and DVU0035 are separated by 388 nucleotides DVU0035 and DVU0036 are separated by 413 nucleotides DVU0036 and DVU0037 are separated by 181 nucleotides DVU0037 and DVU0038 are separated by 337 nucleotides
DVU0034: DVU0034 - DSBA-like thioredoxin domain protein (TIGR), at 40,526 to 41,311
DVU0034
DVU0035: DVU0035 - hypothetical protein (TIGR), at 41,700 to 41,873
DVU0035
DVU0036: DVU0036 - hypothetical protein (TIGR), at 42,287 to 42,742
DVU0036
DVU0037: DVU0037 - conserved hypothetical protein (TIGR), at 42,924 to 43,340
DVU0037
DVU0038: DVU0038 - acyltransferase domain protein (TIGR), at 43,678 to 45,528
DVU0038
Position (kb) 42
43 Strain fitness (log2 ratio) -1
0
1
2 at 41.327 kb on - strand at 41.336 kb on + strand at 41.356 kb on + strand at 41.361 kb on - strand at 41.378 kb on - strand at 41.402 kb on + strand at 41.447 kb on - strand at 41.454 kb on + strand at 41.496 kb on - strand at 41.526 kb on - strand at 41.535 kb on + strand at 41.542 kb on + strand at 41.549 kb on + strand at 41.550 kb on - strand at 41.558 kb on + strand at 41.583 kb on - strand at 41.598 kb on - strand at 41.613 kb on - strand at 41.613 kb on - strand at 41.818 kb on + strand, within DVU0035 at 41.836 kb on - strand, within DVU0035 at 41.860 kb on + strand at 41.879 kb on + strand at 41.881 kb on + strand at 42.001 kb on - strand at 42.002 kb on + strand at 42.011 kb on - strand at 42.028 kb on - strand at 42.083 kb on + strand at 42.083 kb on + strand at 42.091 kb on - strand at 42.091 kb on - strand at 42.091 kb on - strand at 42.126 kb on - strand at 42.242 kb on - strand at 42.335 kb on - strand, within DVU0036 at 42.359 kb on - strand, within DVU0036 at 42.456 kb on - strand, within DVU0036 at 42.514 kb on - strand, within DVU0036 at 42.543 kb on + strand, within DVU0036 at 42.571 kb on - strand, within DVU0036 at 42.701 kb on + strand at 42.701 kb on + strand at 42.709 kb on - strand at 42.716 kb on + strand at 42.719 kb on - strand at 42.970 kb on + strand, within DVU0037 at 43.029 kb on - strand, within DVU0037 at 43.106 kb on - strand, within DVU0037 at 43.225 kb on + strand, within DVU0037 at 43.242 kb on + strand, within DVU0037 at 43.246 kb on + strand, within DVU0037 at 43.246 kb on + strand, within DVU0037 at 43.254 kb on - strand, within DVU0037 at 43.316 kb on + strand at 43.345 kb on - strand at 43.400 kb on - strand at 43.404 kb on + strand at 43.406 kb on + strand at 43.409 kb on + strand at 43.457 kb on + strand at 43.457 kb on + strand at 43.457 kb on + strand at 43.465 kb on - strand at 43.517 kb on - strand at 43.559 kb on - strand at 43.570 kb on + strand at 43.612 kb on - strand at 43.675 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM remove 41,327 - -0.3 41,336 + +0.6 41,356 + +0.0 41,361 - -0.5 41,378 - -0.2 41,402 + +1.8 41,447 - -0.9 41,454 + +0.1 41,496 - +0.8 41,526 - -0.2 41,535 + -0.6 41,542 + -1.4 41,549 + -0.5 41,550 - -0.9 41,558 + -0.2 41,583 - -0.2 41,598 - -1.5 41,613 - -0.2 41,613 - -1.5 41,818 + DVU0035 0.68 -1.0 41,836 - DVU0035 0.78 +0.0 41,860 + -0.0 41,879 + -0.3 41,881 + -0.2 42,001 - -0.0 42,002 + -0.2 42,011 - +1.5 42,028 - -0.2 42,083 + -0.2 42,083 + -0.2 42,091 - -0.3 42,091 - +0.1 42,091 - +0.5 42,126 - -0.0 42,242 - -0.3 42,335 - DVU0036 0.11 -0.4 42,359 - DVU0036 0.16 +0.7 42,456 - DVU0036 0.37 -0.9 42,514 - DVU0036 0.50 +0.8 42,543 + DVU0036 0.56 +0.2 42,571 - DVU0036 0.62 +0.1 42,701 + -0.2 42,701 + -0.2 42,709 - -0.5 42,716 + -0.1 42,719 - -0.4 42,970 + DVU0037 0.11 -0.3 43,029 - DVU0037 0.25 -0.4 43,106 - DVU0037 0.44 +1.5 43,225 + DVU0037 0.72 -0.5 43,242 + DVU0037 0.76 -0.2 43,246 + DVU0037 0.77 -0.2 43,246 + DVU0037 0.77 -1.3 43,254 - DVU0037 0.79 -0.2 43,316 + -0.2 43,345 - +0.0 43,400 - -0.1 43,404 + -0.4 43,406 + +0.2 43,409 + +0.2 43,457 + +0.1 43,457 + -0.5 43,457 + -0.5 43,465 - +2.1 43,517 - +0.8 43,559 - +0.4 43,570 + -0.8 43,612 - -0.2 43,675 + -0.2
Or see this region's nucleotide sequence