Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2963

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2962 and DVU2963 are separated by 3 nucleotidesDVU2963 and DVU2964 are separated by 1 nucleotidesDVU2964 and DVU2965 are separated by 119 nucleotides DVU2962: DVU2962 - sensor histidine kinase (TIGR), at 3,068,730 to 3,070,463 DVU2962 DVU2963: DVU2963 - response regulator (TIGR), at 3,070,467 to 3,070,853 DVU2963 DVU2964: DVU2964 - hypothetical protein (TIGR), at 3,070,855 to 3,071,514 DVU2964 DVU2965: DVU2965 - hypothetical protein (TIGR), at 3,071,634 to 3,071,933 DVU2965 Position (kb) 3070 3071Strain fitness (log2 ratio) -1 0 1 2at 3069.538 kb on - strand, within DVU2962at 3069.578 kb on + strand, within DVU2962at 3069.607 kb on - strand, within DVU2962at 3069.754 kb on + strand, within DVU2962at 3069.754 kb on + strand, within DVU2962at 3069.762 kb on - strand, within DVU2962at 3069.983 kb on + strand, within DVU2962at 3069.988 kb on + strand, within DVU2962at 3070.050 kb on + strand, within DVU2962at 3070.114 kb on + strand, within DVU2962at 3070.178 kb on - strand, within DVU2962at 3070.178 kb on - strand, within DVU2962at 3070.183 kb on - strand, within DVU2962at 3070.457 kb on + strandat 3070.457 kb on + strandat 3070.490 kb on - strandat 3070.547 kb on - strand, within DVU2963at 3070.593 kb on + strand, within DVU2963at 3070.743 kb on - strand, within DVU2963at 3070.751 kb on + strand, within DVU2963at 3070.772 kb on + strand, within DVU2963at 3070.813 kb on - strand, within DVU2963at 3070.824 kb on + strandat 3070.908 kb on + strandat 3070.924 kb on - strand, within DVU2964at 3070.948 kb on + strand, within DVU2964at 3071.015 kb on + strand, within DVU2964at 3071.015 kb on + strand, within DVU2964at 3071.218 kb on - strand, within DVU2964at 3071.224 kb on - strand, within DVU2964at 3071.812 kb on + strand, within DVU2965at 3071.812 kb on + strand, within DVU2965at 3071.828 kb on - strand, within DVU2965

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
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3,069,538 - DVU2962 0.47 +0.4
3,069,578 + DVU2962 0.49 +0.6
3,069,607 - DVU2962 0.51 +1.4
3,069,754 + DVU2962 0.59 +0.6
3,069,754 + DVU2962 0.59 +0.9
3,069,762 - DVU2962 0.60 +0.7
3,069,983 + DVU2962 0.72 +0.7
3,069,988 + DVU2962 0.73 -0.2
3,070,050 + DVU2962 0.76 +0.6
3,070,114 + DVU2962 0.80 -1.1
3,070,178 - DVU2962 0.84 +0.3
3,070,178 - DVU2962 0.84 +0.1
3,070,183 - DVU2962 0.84 -0.4
3,070,457 + +0.6
3,070,457 + -0.2
3,070,490 - +0.9
3,070,547 - DVU2963 0.21 +1.9
3,070,593 + DVU2963 0.33 +0.6
3,070,743 - DVU2963 0.71 +0.2
3,070,751 + DVU2963 0.73 +0.3
3,070,772 + DVU2963 0.79 +1.0
3,070,813 - DVU2963 0.89 -1.6
3,070,824 + +0.2
3,070,908 + +0.4
3,070,924 - DVU2964 0.10 -0.4
3,070,948 + DVU2964 0.14 -0.6
3,071,015 + DVU2964 0.24 +0.3
3,071,015 + DVU2964 0.24 -0.3
3,071,218 - DVU2964 0.55 +0.2
3,071,224 - DVU2964 0.56 +0.2
3,071,812 + DVU2965 0.59 +1.6
3,071,812 + DVU2965 0.59 +2.4
3,071,828 - DVU2965 0.65 +0.1

Or see this region's nucleotide sequence