Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2871

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2869 and DVU2870 are separated by 11 nucleotidesDVU2870 and DVU2871 are separated by 9 nucleotidesDVU2871 and DVU2872 overlap by 17 nucleotides DVU2869: DVU2869 - major head protein (TIGR), at 2,963,910 to 2,964,914 DVU2869 DVU2870: DVU2870 - conserved hypothetical protein (TIGR), at 2,964,926 to 2,965,309 DVU2870 DVU2871: DVU2871 - minor capsid protein C (TIGR), at 2,965,319 to 2,966,638 DVU2871 DVU2872: DVU2872 - phage portal protein, lambda family (TIGR), at 2,966,622 to 2,968,322 DVU2872 Position (kb) 2965 2966 2967Strain fitness (log2 ratio) -1 0 1at 2964.385 kb on + strand, within DVU2869at 2965.486 kb on - strand, within DVU2871at 2965.493 kb on - strand, within DVU2871at 2965.826 kb on + strand, within DVU2871at 2966.004 kb on + strand, within DVU2871at 2966.165 kb on + strand, within DVU2871at 2966.198 kb on - strand, within DVU2871at 2966.198 kb on - strand, within DVU2871at 2966.198 kb on - strand, within DVU2871at 2966.198 kb on - strand, within DVU2871at 2966.517 kb on + strandat 2966.526 kb on + strandat 2966.542 kb on - strandat 2966.950 kb on + strand, within DVU2872at 2967.007 kb on - strand, within DVU2872at 2967.477 kb on - strand, within DVU2872at 2967.505 kb on - strand, within DVU2872at 2967.516 kb on - strand, within DVU2872at 2967.547 kb on - strand, within DVU2872at 2967.567 kb on - strand, within DVU2872

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
remove
2,964,385 + DVU2869 0.47 +0.9
2,965,486 - DVU2871 0.13 +0.6
2,965,493 - DVU2871 0.13 +0.1
2,965,826 + DVU2871 0.38 +0.0
2,966,004 + DVU2871 0.52 +0.3
2,966,165 + DVU2871 0.64 +0.4
2,966,198 - DVU2871 0.67 +0.3
2,966,198 - DVU2871 0.67 -0.4
2,966,198 - DVU2871 0.67 +0.3
2,966,198 - DVU2871 0.67 +0.5
2,966,517 + +0.0
2,966,526 + -1.7
2,966,542 - +0.2
2,966,950 + DVU2872 0.19 -0.2
2,967,007 - DVU2872 0.23 +0.1
2,967,477 - DVU2872 0.50 +0.2
2,967,505 - DVU2872 0.52 -0.0
2,967,516 - DVU2872 0.53 +0.1
2,967,547 - DVU2872 0.54 +0.3
2,967,567 - DVU2872 0.56 +0.6

Or see this region's nucleotide sequence