Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2843

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdcm and vsr are separated by 8 nucleotidesvsr and DVU2844 are separated by 16 nucleotidesDVU2844 and hit are separated by 7 nucleotides DVU2842: dcm - type II DNA modification methyltransferase, putative (TIGR), at 2,946,324 to 2,947,400 dcm DVU2843: vsr - DNA mismatch endonuclease Vsr, putative (TIGR), at 2,947,409 to 2,947,819 vsr DVU2844: DVU2844 - hypothetical protein (TIGR), at 2,947,836 to 2,948,699 DVU2844 DVU2845: hit - HIT family protein (TIGR), at 2,948,707 to 2,949,135 hit Position (kb) 2947 2948Strain fitness (log2 ratio) -1 0 1at 2947.418 kb on + strandat 2947.463 kb on - strand, within vsrat 2947.478 kb on - strand, within vsrat 2947.541 kb on + strand, within vsrat 2947.552 kb on - strand, within vsrat 2947.726 kb on - strand, within vsrat 2947.775 kb on + strand, within vsrat 2948.003 kb on - strand, within DVU2844at 2948.076 kb on - strand, within DVU2844at 2948.119 kb on + strand, within DVU2844at 2948.171 kb on - strand, within DVU2844at 2948.228 kb on - strand, within DVU2844at 2948.235 kb on - strand, within DVU2844at 2948.241 kb on - strand, within DVU2844at 2948.388 kb on - strand, within DVU2844at 2948.390 kb on + strand, within DVU2844at 2948.398 kb on - strand, within DVU2844at 2948.430 kb on + strand, within DVU2844at 2948.438 kb on - strand, within DVU2844at 2948.440 kb on + strand, within DVU2844at 2948.530 kb on - strand, within DVU2844at 2948.548 kb on + strand, within DVU2844at 2948.589 kb on + strand, within DVU2844at 2948.600 kb on + strand, within DVU2844at 2948.666 kb on + strandat 2948.739 kb on + strandat 2948.749 kb on + strandat 2948.749 kb on + strandat 2948.751 kb on + strand, within hit

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
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2,947,418 + +1.0
2,947,463 - vsr DVU2843 0.13 +1.2
2,947,478 - vsr DVU2843 0.17 +1.6
2,947,541 + vsr DVU2843 0.32 +0.3
2,947,552 - vsr DVU2843 0.35 -0.2
2,947,726 - vsr DVU2843 0.77 -0.4
2,947,775 + vsr DVU2843 0.89 +0.0
2,948,003 - DVU2844 0.19 +0.6
2,948,076 - DVU2844 0.28 +0.2
2,948,119 + DVU2844 0.33 -0.1
2,948,171 - DVU2844 0.39 -0.0
2,948,228 - DVU2844 0.45 -1.1
2,948,235 - DVU2844 0.46 -0.3
2,948,241 - DVU2844 0.47 +0.6
2,948,388 - DVU2844 0.64 -0.6
2,948,390 + DVU2844 0.64 -0.1
2,948,398 - DVU2844 0.65 -0.2
2,948,430 + DVU2844 0.69 -0.4
2,948,438 - DVU2844 0.70 -1.1
2,948,440 + DVU2844 0.70 -0.0
2,948,530 - DVU2844 0.80 -1.7
2,948,548 + DVU2844 0.82 +0.0
2,948,589 + DVU2844 0.87 -0.8
2,948,600 + DVU2844 0.88 +1.7
2,948,666 + +0.1
2,948,739 + -1.2
2,948,749 + +0.4
2,948,749 + -0.2
2,948,751 + hit DVU2845 0.10 +1.0

Or see this region's nucleotide sequence