Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2807

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2805 and DVU2806 overlap by 14 nucleotidesDVU2806 and DVU2807 are separated by 19 nucleotidesDVU2807 and DVU2808 overlap by 4 nucleotidesDVU2808 and DVU2809 are separated by 210 nucleotides DVU2805: DVU2805 - cobalamin synthesis protein/P47K family (TIGR), at 2,908,544 to 2,910,490 DVU2805 DVU2806: DVU2806 - MotA/TolQ/ExbB proton channel family protein (TIGR), at 2,910,477 to 2,911,226 DVU2806 DVU2807: DVU2807 - biopolymer transport protein, ExbD/TolR family (TIGR), at 2,911,246 to 2,911,656 DVU2807 DVU2808: DVU2808 - TonB domain protein (TIGR), at 2,911,653 to 2,912,162 DVU2808 DVU2809: DVU2809 - cytochrome c3 (TIGR), at 2,912,373 to 2,912,807 DVU2809 Position (kb) 2911 2912Strain fitness (log2 ratio) -1 0 1 2at 2910.327 kb on + strandat 2910.365 kb on - strandat 2910.484 kb on + strandat 2910.506 kb on + strandat 2910.514 kb on - strandat 2910.514 kb on - strandat 2910.531 kb on + strandat 2910.622 kb on - strand, within DVU2806at 2910.622 kb on - strand, within DVU2806at 2910.622 kb on - strand, within DVU2806at 2910.622 kb on - strand, within DVU2806at 2910.622 kb on - strand, within DVU2806at 2910.645 kb on + strand, within DVU2806at 2910.704 kb on + strand, within DVU2806at 2910.770 kb on - strand, within DVU2806at 2910.784 kb on + strand, within DVU2806at 2910.799 kb on + strand, within DVU2806at 2910.802 kb on - strand, within DVU2806at 2910.855 kb on + strand, within DVU2806at 2910.981 kb on + strand, within DVU2806at 2911.046 kb on + strand, within DVU2806at 2911.115 kb on - strand, within DVU2806at 2911.208 kb on - strandat 2911.281 kb on - strandat 2911.290 kb on - strand, within DVU2807at 2911.322 kb on + strand, within DVU2807at 2911.374 kb on + strand, within DVU2807at 2911.397 kb on - strand, within DVU2807at 2911.474 kb on - strand, within DVU2807at 2911.484 kb on - strand, within DVU2807at 2911.562 kb on - strand, within DVU2807at 2911.578 kb on + strand, within DVU2807at 2911.826 kb on - strand, within DVU2808at 2911.945 kb on + strand, within DVU2808at 2911.970 kb on + strand, within DVU2808at 2912.093 kb on - strand, within DVU2808at 2912.093 kb on - strand, within DVU2808at 2912.183 kb on + strandat 2912.191 kb on - strandat 2912.242 kb on + strandat 2912.245 kb on - strandat 2912.267 kb on + strandat 2912.277 kb on + strandat 2912.298 kb on + strandat 2912.549 kb on + strand, within DVU2809at 2912.587 kb on + strand, within DVU2809at 2912.617 kb on + strand, within DVU2809at 2912.642 kb on - strand, within DVU2809at 2912.655 kb on + strand, within DVU2809

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
remove
2,910,327 + -0.8
2,910,365 - +1.2
2,910,484 + +0.1
2,910,506 + +0.1
2,910,514 - -0.2
2,910,514 - -0.2
2,910,531 + +0.4
2,910,622 - DVU2806 0.19 -0.3
2,910,622 - DVU2806 0.19 -0.7
2,910,622 - DVU2806 0.19 +0.8
2,910,622 - DVU2806 0.19 -0.0
2,910,622 - DVU2806 0.19 +0.1
2,910,645 + DVU2806 0.22 -0.4
2,910,704 + DVU2806 0.30 -0.4
2,910,770 - DVU2806 0.39 -0.3
2,910,784 + DVU2806 0.41 -0.4
2,910,799 + DVU2806 0.43 -0.1
2,910,802 - DVU2806 0.43 -0.0
2,910,855 + DVU2806 0.50 +0.0
2,910,981 + DVU2806 0.67 -0.4
2,911,046 + DVU2806 0.76 +0.1
2,911,115 - DVU2806 0.85 -0.1
2,911,208 - -0.5
2,911,281 - +1.3
2,911,290 - DVU2807 0.11 +0.3
2,911,322 + DVU2807 0.18 -0.4
2,911,374 + DVU2807 0.31 -0.1
2,911,397 - DVU2807 0.37 +1.3
2,911,474 - DVU2807 0.55 +1.9
2,911,484 - DVU2807 0.58 +0.1
2,911,562 - DVU2807 0.77 +0.3
2,911,578 + DVU2807 0.81 -0.1
2,911,826 - DVU2808 0.34 -0.2
2,911,945 + DVU2808 0.57 -0.9
2,911,970 + DVU2808 0.62 -0.1
2,912,093 - DVU2808 0.86 -0.2
2,912,093 - DVU2808 0.86 -0.4
2,912,183 + -0.5
2,912,191 - -0.4
2,912,242 + -0.1
2,912,245 - -0.8
2,912,267 + -0.3
2,912,277 + +0.1
2,912,298 + -0.4
2,912,549 + DVU2809 0.40 -0.7
2,912,587 + DVU2809 0.49 -0.4
2,912,617 + DVU2809 0.56 +1.5
2,912,642 - DVU2809 0.62 +1.1
2,912,655 + DVU2809 0.65 -0.1

Or see this region's nucleotide sequence