Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2676

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2675 and DVU2676 are separated by 250 nucleotidesDVU2676 and DVU2677 are separated by 127 nucleotides DVU2675: DVU2675 - DNA-binding response regulator, LuxR family (TIGR), at 2,786,675 to 2,787,358 DVU2675 DVU2676: DVU2676 - hypothetical protein (TIGR), at 2,787,609 to 2,787,875 DVU2676 DVU2677: DVU2677 - sensor histidine kinase/response regulator (TIGR), at 2,788,003 to 2,789,466 DVU2677 Position (kb) 2787 2788Strain fitness (log2 ratio) -1 0 1 2 3at 2786.691 kb on + strandat 2786.741 kb on + strandat 2786.751 kb on + strand, within DVU2675at 2786.759 kb on - strand, within DVU2675at 2786.764 kb on - strand, within DVU2675at 2786.817 kb on + strand, within DVU2675at 2786.864 kb on + strand, within DVU2675at 2786.864 kb on + strand, within DVU2675at 2786.881 kb on + strand, within DVU2675at 2786.918 kb on + strand, within DVU2675at 2786.936 kb on - strand, within DVU2675at 2786.941 kb on - strand, within DVU2675at 2787.018 kb on - strand, within DVU2675at 2787.022 kb on + strand, within DVU2675at 2787.030 kb on - strand, within DVU2675at 2787.137 kb on + strand, within DVU2675at 2787.138 kb on + strand, within DVU2675at 2787.202 kb on + strand, within DVU2675at 2787.216 kb on + strand, within DVU2675at 2787.216 kb on + strand, within DVU2675at 2787.218 kb on + strand, within DVU2675at 2787.224 kb on - strand, within DVU2675at 2787.234 kb on - strand, within DVU2675at 2787.234 kb on - strand, within DVU2675at 2787.352 kb on + strandat 2787.360 kb on - strandat 2787.398 kb on + strandat 2787.398 kb on + strandat 2787.406 kb on - strandat 2787.718 kb on - strand, within DVU2676at 2787.744 kb on - strand, within DVU2676at 2787.787 kb on + strand, within DVU2676at 2787.795 kb on - strand, within DVU2676at 2787.798 kb on + strand, within DVU2676at 2787.832 kb on - strand, within DVU2676at 2787.846 kb on + strand, within DVU2676at 2787.971 kb on - strandat 2787.996 kb on - strandat 2788.001 kb on - strandat 2788.027 kb on + strandat 2788.040 kb on + strandat 2788.040 kb on + strandat 2788.040 kb on + strandat 2788.048 kb on - strandat 2788.048 kb on - strandat 2788.198 kb on + strand, within DVU2677at 2788.242 kb on + strand, within DVU2677at 2788.270 kb on + strand, within DVU2677at 2788.277 kb on + strand, within DVU2677at 2788.286 kb on - strand, within DVU2677at 2788.418 kb on + strand, within DVU2677at 2788.476 kb on + strand, within DVU2677at 2788.521 kb on + strand, within DVU2677at 2788.629 kb on + strand, within DVU2677at 2788.646 kb on - strand, within DVU2677

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
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2,786,691 + +1.9
2,786,741 + -0.5
2,786,751 + DVU2675 0.11 -0.4
2,786,759 - DVU2675 0.12 +2.1
2,786,764 - DVU2675 0.13 -0.2
2,786,817 + DVU2675 0.21 -1.4
2,786,864 + DVU2675 0.28 -0.1
2,786,864 + DVU2675 0.28 -0.5
2,786,881 + DVU2675 0.30 -0.6
2,786,918 + DVU2675 0.36 -0.5
2,786,936 - DVU2675 0.38 -0.4
2,786,941 - DVU2675 0.39 +0.0
2,787,018 - DVU2675 0.50 -0.3
2,787,022 + DVU2675 0.51 -1.0
2,787,030 - DVU2675 0.52 -0.1
2,787,137 + DVU2675 0.68 +1.1
2,787,138 + DVU2675 0.68 +0.5
2,787,202 + DVU2675 0.77 +1.2
2,787,216 + DVU2675 0.79 -0.3
2,787,216 + DVU2675 0.79 +0.3
2,787,218 + DVU2675 0.79 -0.8
2,787,224 - DVU2675 0.80 -0.1
2,787,234 - DVU2675 0.82 +0.0
2,787,234 - DVU2675 0.82 -0.0
2,787,352 + -0.0
2,787,360 - +0.6
2,787,398 + -1.4
2,787,398 + -0.0
2,787,406 - -0.7
2,787,718 - DVU2676 0.41 -0.4
2,787,744 - DVU2676 0.51 +0.2
2,787,787 + DVU2676 0.67 +2.0
2,787,795 - DVU2676 0.70 -0.1
2,787,798 + DVU2676 0.71 -0.9
2,787,832 - DVU2676 0.84 +0.9
2,787,846 + DVU2676 0.89 +1.8
2,787,971 - -0.1
2,787,996 - +0.1
2,788,001 - +2.1
2,788,027 + +0.9
2,788,040 + -0.8
2,788,040 + -0.5
2,788,040 + -0.6
2,788,048 - -0.8
2,788,048 - +0.0
2,788,198 + DVU2677 0.13 -0.0
2,788,242 + DVU2677 0.16 -0.4
2,788,270 + DVU2677 0.18 +0.4
2,788,277 + DVU2677 0.19 -0.2
2,788,286 - DVU2677 0.19 +2.9
2,788,418 + DVU2677 0.28 -0.4
2,788,476 + DVU2677 0.32 -0.1
2,788,521 + DVU2677 0.35 +0.1
2,788,629 + DVU2677 0.43 -0.6
2,788,646 - DVU2677 0.44 +0.0

Or see this region's nucleotide sequence