Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2638

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2637 and DVU2638 are separated by 327 nucleotidesDVU2638 and DVU2639 are separated by 222 nucleotidesDVU2639 and DVU2640 are separated by 352 nucleotides DVU2637: DVU2637 - HAMP domain protein (TIGR), at 2,752,529 to 2,753,992 DVU2637 DVU2638: DVU2638 - conserved domain protein (TIGR), at 2,754,320 to 2,755,408 DVU2638 DVU2639: DVU2639 - conserved hypothetical protein (TIGR), at 2,755,631 to 2,755,933 DVU2639 DVU2640: DVU2640 - hypothetical protein (TIGR), at 2,756,286 to 2,757,026 DVU2640 Position (kb) 2754 2755 2756Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2753.439 kb on + strand, within DVU2637at 2753.444 kb on + strand, within DVU2637at 2753.447 kb on - strand, within DVU2637at 2753.626 kb on + strand, within DVU2637at 2753.649 kb on + strand, within DVU2637at 2753.650 kb on - strand, within DVU2637at 2753.676 kb on + strand, within DVU2637at 2753.695 kb on + strand, within DVU2637at 2753.695 kb on + strand, within DVU2637at 2753.695 kb on + strand, within DVU2637at 2753.818 kb on + strand, within DVU2637at 2753.819 kb on + strand, within DVU2637at 2753.910 kb on - strandat 2753.910 kb on - strandat 2753.923 kb on - strandat 2753.962 kb on - strandat 2754.004 kb on - strandat 2754.056 kb on + strandat 2754.144 kb on + strandat 2754.156 kb on + strandat 2754.156 kb on + strandat 2754.181 kb on - strandat 2754.187 kb on - strandat 2754.254 kb on + strandat 2754.363 kb on + strandat 2754.383 kb on + strandat 2754.383 kb on + strandat 2754.405 kb on - strandat 2754.419 kb on + strandat 2754.577 kb on + strand, within DVU2638at 2754.601 kb on - strand, within DVU2638at 2754.631 kb on + strand, within DVU2638at 2754.653 kb on + strand, within DVU2638at 2754.658 kb on + strand, within DVU2638at 2754.702 kb on + strand, within DVU2638at 2754.724 kb on - strand, within DVU2638at 2754.905 kb on + strand, within DVU2638at 2754.916 kb on + strand, within DVU2638at 2754.923 kb on + strand, within DVU2638at 2754.953 kb on + strand, within DVU2638at 2754.984 kb on - strand, within DVU2638at 2754.986 kb on + strand, within DVU2638at 2755.046 kb on - strand, within DVU2638at 2755.343 kb on + strandat 2755.397 kb on + strandat 2755.397 kb on + strandat 2755.438 kb on + strandat 2755.576 kb on + strandat 2755.586 kb on - strandat 2755.596 kb on - strandat 2755.611 kb on + strandat 2755.645 kb on + strandat 2755.653 kb on - strandat 2755.700 kb on - strand, within DVU2639at 2755.743 kb on - strand, within DVU2639at 2755.779 kb on - strand, within DVU2639at 2755.799 kb on + strand, within DVU2639at 2755.816 kb on + strand, within DVU2639at 2755.869 kb on - strand, within DVU2639at 2755.905 kb on + strandat 2755.905 kb on + strandat 2755.976 kb on + strandat 2756.078 kb on + strandat 2756.083 kb on + strandat 2756.083 kb on + strandat 2756.101 kb on - strandat 2756.151 kb on + strandat 2756.159 kb on - strandat 2756.161 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
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2,753,439 + DVU2637 0.62 +1.9
2,753,444 + DVU2637 0.62 -1.0
2,753,447 - DVU2637 0.63 +0.6
2,753,626 + DVU2637 0.75 -0.1
2,753,649 + DVU2637 0.77 +0.6
2,753,650 - DVU2637 0.77 -0.1
2,753,676 + DVU2637 0.78 +1.1
2,753,695 + DVU2637 0.80 +0.1
2,753,695 + DVU2637 0.80 -0.8
2,753,695 + DVU2637 0.80 -0.0
2,753,818 + DVU2637 0.88 +0.7
2,753,819 + DVU2637 0.88 -0.1
2,753,910 - -0.1
2,753,910 - -0.1
2,753,923 - -0.0
2,753,962 - -3.1
2,754,004 - +0.7
2,754,056 + +0.1
2,754,144 + -0.5
2,754,156 + +1.6
2,754,156 + -1.0
2,754,181 - -0.4
2,754,187 - -0.1
2,754,254 + +0.1
2,754,363 + +0.2
2,754,383 + +1.9
2,754,383 + +2.4
2,754,405 - -0.2
2,754,419 + -0.3
2,754,577 + DVU2638 0.24 +0.3
2,754,601 - DVU2638 0.26 +1.1
2,754,631 + DVU2638 0.29 +0.1
2,754,653 + DVU2638 0.31 -0.2
2,754,658 + DVU2638 0.31 +0.2
2,754,702 + DVU2638 0.35 -0.0
2,754,724 - DVU2638 0.37 -0.1
2,754,905 + DVU2638 0.54 +0.7
2,754,916 + DVU2638 0.55 +0.1
2,754,923 + DVU2638 0.55 +1.0
2,754,953 + DVU2638 0.58 +1.9
2,754,984 - DVU2638 0.61 +0.1
2,754,986 + DVU2638 0.61 +0.2
2,755,046 - DVU2638 0.67 +0.7
2,755,343 + -0.6
2,755,397 + +0.0
2,755,397 + +0.3
2,755,438 + -0.2
2,755,576 + +0.9
2,755,586 - +1.7
2,755,596 - +0.1
2,755,611 + -0.1
2,755,645 + -0.2
2,755,653 - -0.2
2,755,700 - DVU2639 0.23 -0.6
2,755,743 - DVU2639 0.37 -0.7
2,755,779 - DVU2639 0.49 -1.1
2,755,799 + DVU2639 0.55 +0.1
2,755,816 + DVU2639 0.61 -0.1
2,755,869 - DVU2639 0.79 -0.8
2,755,905 + -0.9
2,755,905 + -0.1
2,755,976 + -0.8
2,756,078 + -0.1
2,756,083 + -0.5
2,756,083 + -1.8
2,756,101 - -0.3
2,756,151 + -0.3
2,756,159 - +2.4
2,756,161 + +0.4

Or see this region's nucleotide sequence