Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2637 and DVU2638 are separated by 327 nucleotides DVU2638 and DVU2639 are separated by 222 nucleotides DVU2639 and DVU2640 are separated by 352 nucleotides
DVU2637: DVU2637 - HAMP domain protein (TIGR), at 2,752,529 to 2,753,992
DVU2637
DVU2638: DVU2638 - conserved domain protein (TIGR), at 2,754,320 to 2,755,408
DVU2638
DVU2639: DVU2639 - conserved hypothetical protein (TIGR), at 2,755,631 to 2,755,933
DVU2639
DVU2640: DVU2640 - hypothetical protein (TIGR), at 2,756,286 to 2,757,026
DVU2640
Position (kb)
2754
2755
2756 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2753.439 kb on + strand, within DVU2637 at 2753.444 kb on + strand, within DVU2637 at 2753.447 kb on - strand, within DVU2637 at 2753.626 kb on + strand, within DVU2637 at 2753.649 kb on + strand, within DVU2637 at 2753.650 kb on - strand, within DVU2637 at 2753.676 kb on + strand, within DVU2637 at 2753.695 kb on + strand, within DVU2637 at 2753.695 kb on + strand, within DVU2637 at 2753.695 kb on + strand, within DVU2637 at 2753.818 kb on + strand, within DVU2637 at 2753.819 kb on + strand, within DVU2637 at 2753.910 kb on - strand at 2753.910 kb on - strand at 2753.923 kb on - strand at 2753.962 kb on - strand at 2754.004 kb on - strand at 2754.056 kb on + strand at 2754.144 kb on + strand at 2754.156 kb on + strand at 2754.156 kb on + strand at 2754.181 kb on - strand at 2754.187 kb on - strand at 2754.254 kb on + strand at 2754.363 kb on + strand at 2754.383 kb on + strand at 2754.383 kb on + strand at 2754.405 kb on - strand at 2754.419 kb on + strand at 2754.577 kb on + strand, within DVU2638 at 2754.601 kb on - strand, within DVU2638 at 2754.631 kb on + strand, within DVU2638 at 2754.653 kb on + strand, within DVU2638 at 2754.658 kb on + strand, within DVU2638 at 2754.702 kb on + strand, within DVU2638 at 2754.724 kb on - strand, within DVU2638 at 2754.905 kb on + strand, within DVU2638 at 2754.916 kb on + strand, within DVU2638 at 2754.923 kb on + strand, within DVU2638 at 2754.953 kb on + strand, within DVU2638 at 2754.984 kb on - strand, within DVU2638 at 2754.986 kb on + strand, within DVU2638 at 2755.046 kb on - strand, within DVU2638 at 2755.343 kb on + strand at 2755.397 kb on + strand at 2755.397 kb on + strand at 2755.438 kb on + strand at 2755.576 kb on + strand at 2755.586 kb on - strand at 2755.596 kb on - strand at 2755.611 kb on + strand at 2755.645 kb on + strand at 2755.653 kb on - strand at 2755.700 kb on - strand, within DVU2639 at 2755.743 kb on - strand, within DVU2639 at 2755.779 kb on - strand, within DVU2639 at 2755.799 kb on + strand, within DVU2639 at 2755.816 kb on + strand, within DVU2639 at 2755.869 kb on - strand, within DVU2639 at 2755.905 kb on + strand at 2755.905 kb on + strand at 2755.976 kb on + strand at 2756.078 kb on + strand at 2756.083 kb on + strand at 2756.083 kb on + strand at 2756.101 kb on - strand at 2756.151 kb on + strand at 2756.159 kb on - strand at 2756.161 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM remove 2,753,439 + DVU2637 0.62 +1.9 2,753,444 + DVU2637 0.62 -1.0 2,753,447 - DVU2637 0.63 +0.6 2,753,626 + DVU2637 0.75 -0.1 2,753,649 + DVU2637 0.77 +0.6 2,753,650 - DVU2637 0.77 -0.1 2,753,676 + DVU2637 0.78 +1.1 2,753,695 + DVU2637 0.80 +0.1 2,753,695 + DVU2637 0.80 -0.8 2,753,695 + DVU2637 0.80 -0.0 2,753,818 + DVU2637 0.88 +0.7 2,753,819 + DVU2637 0.88 -0.1 2,753,910 - -0.1 2,753,910 - -0.1 2,753,923 - -0.0 2,753,962 - -3.1 2,754,004 - +0.7 2,754,056 + +0.1 2,754,144 + -0.5 2,754,156 + +1.6 2,754,156 + -1.0 2,754,181 - -0.4 2,754,187 - -0.1 2,754,254 + +0.1 2,754,363 + +0.2 2,754,383 + +1.9 2,754,383 + +2.4 2,754,405 - -0.2 2,754,419 + -0.3 2,754,577 + DVU2638 0.24 +0.3 2,754,601 - DVU2638 0.26 +1.1 2,754,631 + DVU2638 0.29 +0.1 2,754,653 + DVU2638 0.31 -0.2 2,754,658 + DVU2638 0.31 +0.2 2,754,702 + DVU2638 0.35 -0.0 2,754,724 - DVU2638 0.37 -0.1 2,754,905 + DVU2638 0.54 +0.7 2,754,916 + DVU2638 0.55 +0.1 2,754,923 + DVU2638 0.55 +1.0 2,754,953 + DVU2638 0.58 +1.9 2,754,984 - DVU2638 0.61 +0.1 2,754,986 + DVU2638 0.61 +0.2 2,755,046 - DVU2638 0.67 +0.7 2,755,343 + -0.6 2,755,397 + +0.0 2,755,397 + +0.3 2,755,438 + -0.2 2,755,576 + +0.9 2,755,586 - +1.7 2,755,596 - +0.1 2,755,611 + -0.1 2,755,645 + -0.2 2,755,653 - -0.2 2,755,700 - DVU2639 0.23 -0.6 2,755,743 - DVU2639 0.37 -0.7 2,755,779 - DVU2639 0.49 -1.1 2,755,799 + DVU2639 0.55 +0.1 2,755,816 + DVU2639 0.61 -0.1 2,755,869 - DVU2639 0.79 -0.8 2,755,905 + -0.9 2,755,905 + -0.1 2,755,976 + -0.8 2,756,078 + -0.1 2,756,083 + -0.5 2,756,083 + -1.8 2,756,101 - -0.3 2,756,151 + -0.3 2,756,159 - +2.4 2,756,161 + +0.4
Or see this region's nucleotide sequence