Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2308

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2306 and DVU2307 are separated by 97 nucleotidesDVU2307 and DVU2308 are separated by 11 nucleotidesDVU2308 and DVU2309 are separated by 261 nucleotides DVU2306: DVU2306 - phosphate transporter family protein (TIGR), at 2,399,112 to 2,400,122 DVU2306 DVU2307: DVU2307 - C4-type zinc finger protein, DksA/TraR family (TIGR), at 2,400,220 to 2,400,441 DVU2307 DVU2308: DVU2308 - conserved hypothetical protein TIGR00022 (TIGR), at 2,400,453 to 2,400,944 DVU2308 DVU2309: DVU2309 - methyl-accepting chemotaxis protein, putative (TIGR), at 2,401,206 to 2,403,293 DVU2309 Position (kb) 2400 2401Strain fitness (log2 ratio) -2 -1 0 1 2at 2399.456 kb on + strand, within DVU2306at 2399.461 kb on - strand, within DVU2306at 2399.481 kb on + strand, within DVU2306at 2399.484 kb on - strand, within DVU2306at 2399.800 kb on - strand, within DVU2306at 2400.254 kb on + strand, within DVU2307at 2400.259 kb on + strand, within DVU2307at 2400.307 kb on - strand, within DVU2307at 2400.307 kb on - strand, within DVU2307at 2400.353 kb on - strand, within DVU2307at 2400.377 kb on + strand, within DVU2307at 2400.385 kb on - strand, within DVU2307at 2400.459 kb on + strandat 2400.467 kb on - strandat 2400.504 kb on - strand, within DVU2308at 2400.533 kb on + strand, within DVU2308at 2400.554 kb on + strand, within DVU2308at 2400.612 kb on + strand, within DVU2308at 2400.634 kb on + strand, within DVU2308at 2400.750 kb on + strand, within DVU2308at 2400.750 kb on + strand, within DVU2308at 2401.128 kb on - strandat 2401.137 kb on + strandat 2401.153 kb on - strandat 2401.172 kb on - strandat 2401.172 kb on - strandat 2401.193 kb on - strandat 2401.342 kb on - strandat 2401.381 kb on - strandat 2401.381 kb on - strandat 2401.473 kb on - strand, within DVU2309at 2401.507 kb on - strand, within DVU2309at 2401.569 kb on + strand, within DVU2309at 2401.572 kb on - strand, within DVU2309at 2401.613 kb on + strand, within DVU2309at 2401.670 kb on - strand, within DVU2309at 2401.706 kb on - strand, within DVU2309at 2401.748 kb on - strand, within DVU2309at 2401.798 kb on - strand, within DVU2309at 2401.832 kb on - strand, within DVU2309at 2401.844 kb on + strand, within DVU2309at 2401.849 kb on + strand, within DVU2309

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
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2,399,456 + DVU2306 0.34 +1.4
2,399,461 - DVU2306 0.35 -0.8
2,399,481 + DVU2306 0.36 +0.0
2,399,484 - DVU2306 0.37 +0.8
2,399,800 - DVU2306 0.68 -0.5
2,400,254 + DVU2307 0.15 +0.1
2,400,259 + DVU2307 0.18 +0.4
2,400,307 - DVU2307 0.39 -0.5
2,400,307 - DVU2307 0.39 +0.7
2,400,353 - DVU2307 0.60 -1.2
2,400,377 + DVU2307 0.71 -0.7
2,400,385 - DVU2307 0.74 +2.2
2,400,459 + -2.4
2,400,467 - -0.0
2,400,504 - DVU2308 0.10 +0.2
2,400,533 + DVU2308 0.16 -0.1
2,400,554 + DVU2308 0.21 +0.0
2,400,612 + DVU2308 0.32 +0.4
2,400,634 + DVU2308 0.37 -0.1
2,400,750 + DVU2308 0.60 +0.8
2,400,750 + DVU2308 0.60 +0.1
2,401,128 - +0.7
2,401,137 + -0.1
2,401,153 - +0.1
2,401,172 - +1.0
2,401,172 - +0.4
2,401,193 - -0.0
2,401,342 - -0.1
2,401,381 - -0.3
2,401,381 - -0.0
2,401,473 - DVU2309 0.13 +0.0
2,401,507 - DVU2309 0.14 +0.0
2,401,569 + DVU2309 0.17 +0.0
2,401,572 - DVU2309 0.18 +0.6
2,401,613 + DVU2309 0.19 +1.3
2,401,670 - DVU2309 0.22 -0.4
2,401,706 - DVU2309 0.24 +0.3
2,401,748 - DVU2309 0.26 +1.8
2,401,798 - DVU2309 0.28 -0.3
2,401,832 - DVU2309 0.30 -1.2
2,401,844 + DVU2309 0.31 +0.5
2,401,849 + DVU2309 0.31 -0.4

Or see this region's nucleotide sequence