Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2209

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2206 and DVU2207 are separated by 51 nucleotidesDVU2207 and DVU2208 overlap by 73 nucleotidesDVU2208 and tRNA-Gly are separated by 111 nucleotidestRNA-Gly and DVU2209 are separated by 259 nucleotidesDVU2209 and DVU2210 overlap by 4 nucleotides DVU2206: DVU2206 - conserved hypothetical protein (TIGR), at 2,302,938 to 2,303,609 DVU2206 DVU2207: DVU2207 - hypothetical protein (TIGR), at 2,303,661 to 2,303,834 DVU2207 DVU2208: DVU2208 - hypothetical protein (TIGR), at 2,303,762 to 2,303,875 DVU2208 DVU_tRNA-Gly-4: tRNA-Gly - tRNA with anticodon GCC for Gly (VIMSS-AUTO), at 2,303,987 to 2,304,061 tRNA-Gly DVU2209: DVU2209 - conserved hypothetical protein (TIGR), at 2,304,321 to 2,305,043 DVU2209 DVU2210: DVU2210 - TPR domain protein (TIGR), at 2,305,040 to 2,306,767 DVU2210 Position (kb) 2304 2305 2306Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2303.356 kb on - strand, within DVU2206at 2303.364 kb on + strand, within DVU2206at 2303.382 kb on + strand, within DVU2206at 2303.443 kb on + strand, within DVU2206at 2303.443 kb on - strand, within DVU2206at 2303.714 kb on - strand, within DVU2207at 2303.782 kb on + strandat 2303.906 kb on - strandat 2303.910 kb on + strandat 2303.946 kb on + strandat 2303.976 kb on + strandat 2304.157 kb on - strandat 2304.159 kb on + strandat 2304.167 kb on - strandat 2304.203 kb on + strandat 2304.203 kb on + strandat 2304.326 kb on + strandat 2304.328 kb on + strandat 2304.400 kb on + strand, within DVU2209at 2304.423 kb on - strand, within DVU2209at 2304.449 kb on + strand, within DVU2209at 2304.584 kb on + strand, within DVU2209at 2304.592 kb on - strand, within DVU2209at 2304.790 kb on + strand, within DVU2209at 2304.876 kb on + strand, within DVU2209at 2304.881 kb on + strand, within DVU2209at 2304.884 kb on + strand, within DVU2209at 2304.889 kb on - strand, within DVU2209at 2304.907 kb on - strand, within DVU2209at 2305.001 kb on - strandat 2305.020 kb on + strandat 2305.070 kb on - strandat 2305.071 kb on + strandat 2305.181 kb on - strandat 2305.307 kb on - strand, within DVU2210at 2305.424 kb on + strand, within DVU2210at 2305.432 kb on - strand, within DVU2210at 2305.481 kb on - strand, within DVU2210at 2305.481 kb on - strand, within DVU2210at 2305.481 kb on - strand, within DVU2210at 2305.530 kb on + strand, within DVU2210at 2305.549 kb on - strand, within DVU2210at 2305.604 kb on - strand, within DVU2210at 2305.621 kb on - strand, within DVU2210at 2305.661 kb on - strand, within DVU2210at 2305.670 kb on - strand, within DVU2210at 2305.710 kb on + strand, within DVU2210at 2305.718 kb on - strand, within DVU2210at 2305.718 kb on - strand, within DVU2210at 2305.718 kb on - strand, within DVU2210at 2305.752 kb on + strand, within DVU2210at 2305.851 kb on - strand, within DVU2210at 2305.882 kb on + strand, within DVU2210at 2305.887 kb on + strand, within DVU2210at 2305.910 kb on - strand, within DVU2210at 2305.950 kb on + strand, within DVU2210at 2305.950 kb on + strand, within DVU2210

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
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2,303,356 - DVU2206 0.62 +0.4
2,303,364 + DVU2206 0.63 -0.2
2,303,382 + DVU2206 0.66 -0.2
2,303,443 + DVU2206 0.75 -0.8
2,303,443 - DVU2206 0.75 -1.0
2,303,714 - DVU2207 0.30 -0.3
2,303,782 + +0.0
2,303,906 - +0.4
2,303,910 + +0.0
2,303,946 + +0.0
2,303,976 + -0.6
2,304,157 - +0.9
2,304,159 + -0.2
2,304,167 - -4.8
2,304,203 + +0.2
2,304,203 + +0.4
2,304,326 + +0.2
2,304,328 + -0.1
2,304,400 + DVU2209 0.11 +0.1
2,304,423 - DVU2209 0.14 -1.3
2,304,449 + DVU2209 0.18 +0.7
2,304,584 + DVU2209 0.36 +0.2
2,304,592 - DVU2209 0.37 +1.5
2,304,790 + DVU2209 0.65 +0.3
2,304,876 + DVU2209 0.77 +0.4
2,304,881 + DVU2209 0.77 +0.2
2,304,884 + DVU2209 0.78 +0.1
2,304,889 - DVU2209 0.79 +1.0
2,304,907 - DVU2209 0.81 +0.2
2,305,001 - +1.2
2,305,020 + +0.1
2,305,070 - +1.0
2,305,071 + +1.4
2,305,181 - +0.4
2,305,307 - DVU2210 0.15 -0.8
2,305,424 + DVU2210 0.22 -0.2
2,305,432 - DVU2210 0.23 +0.5
2,305,481 - DVU2210 0.26 +1.2
2,305,481 - DVU2210 0.26 +0.3
2,305,481 - DVU2210 0.26 +0.0
2,305,530 + DVU2210 0.28 +0.6
2,305,549 - DVU2210 0.29 +1.7
2,305,604 - DVU2210 0.33 +0.7
2,305,621 - DVU2210 0.34 +1.0
2,305,661 - DVU2210 0.36 +0.8
2,305,670 - DVU2210 0.36 +0.5
2,305,710 + DVU2210 0.39 +0.3
2,305,718 - DVU2210 0.39 +1.0
2,305,718 - DVU2210 0.39 +0.6
2,305,718 - DVU2210 0.39 +0.2
2,305,752 + DVU2210 0.41 +1.5
2,305,851 - DVU2210 0.47 +1.5
2,305,882 + DVU2210 0.49 +0.5
2,305,887 + DVU2210 0.49 +0.6
2,305,910 - DVU2210 0.50 +0.5
2,305,950 + DVU2210 0.53 +0.4
2,305,950 + DVU2210 0.53 +0.2

Or see this region's nucleotide sequence