Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1787

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1786 and DVU1787 are separated by 32 nucleotidesDVU1787 and rpoD are separated by 227 nucleotides DVU1786: DVU1786 - GGDEF domain protein (TIGR), at 1,849,057 to 1,850,115 DVU1786 DVU1787: DVU1787 - nuclease domain protein (TIGR), at 1,850,148 to 1,850,774 DVU1787 DVU1788: rpoD - RNA polymerase sigma-70 factor (TIGR), at 1,851,002 to 1,852,774 rpoD Position (kb) 1850 1851Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1849.172 kb on - strand, within DVU1786at 1849.205 kb on + strand, within DVU1786at 1849.205 kb on + strand, within DVU1786at 1849.259 kb on + strand, within DVU1786at 1849.304 kb on - strand, within DVU1786at 1849.408 kb on + strand, within DVU1786at 1849.427 kb on + strand, within DVU1786at 1849.713 kb on - strand, within DVU1786at 1850.153 kb on - strandat 1850.338 kb on + strand, within DVU1787at 1850.338 kb on + strand, within DVU1787at 1850.625 kb on - strand, within DVU1787at 1850.625 kb on - strand, within DVU1787at 1850.635 kb on - strand, within DVU1787at 1850.854 kb on + strandat 1850.854 kb on + strandat 1850.862 kb on - strandat 1850.909 kb on - strandat 1850.987 kb on - strandat 1850.987 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
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1,849,172 - DVU1786 0.11 -0.3
1,849,205 + DVU1786 0.14 -1.6
1,849,205 + DVU1786 0.14 +1.0
1,849,259 + DVU1786 0.19 -0.2
1,849,304 - DVU1786 0.23 +0.4
1,849,408 + DVU1786 0.33 -1.4
1,849,427 + DVU1786 0.35 +1.3
1,849,713 - DVU1786 0.62 -2.8
1,850,153 - -1.6
1,850,338 + DVU1787 0.30 +0.1
1,850,338 + DVU1787 0.30 +0.3
1,850,625 - DVU1787 0.76 +1.8
1,850,625 - DVU1787 0.76 -0.5
1,850,635 - DVU1787 0.78 +1.0
1,850,854 + -0.6
1,850,854 + -0.3
1,850,862 - -0.0
1,850,909 - -0.2
1,850,987 - -0.8
1,850,987 - -0.4

Or see this region's nucleotide sequence