Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1235 and DVU1236 are separated by 379 nucleotides DVU1236 and glnP overlap by 14 nucleotides glnP and DVU1238 are separated by 106 nucleotides
DVU1235: DVU1235 - hypothetical protein (TIGR), at 1,324,232 to 1,324,852
DVU1235
DVU1236: DVU1236 - amino acid ABC transporter, ATP-binding protein (TIGR), at 1,325,232 to 1,325,975
DVU1236
DVU1237: glnP - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 1,325,962 to 1,326,732
glnP
DVU1238: DVU1238 - amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR), at 1,326,839 to 1,327,579
DVU1238
Position (kb)
1325
1326 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1324.300 kb on - strand, within DVU1235 at 1324.310 kb on + strand, within DVU1235 at 1324.310 kb on + strand, within DVU1235 at 1324.318 kb on - strand, within DVU1235 at 1324.413 kb on + strand, within DVU1235 at 1324.437 kb on + strand, within DVU1235 at 1324.472 kb on + strand, within DVU1235 at 1324.477 kb on - strand, within DVU1235 at 1324.515 kb on + strand, within DVU1235 at 1324.535 kb on + strand, within DVU1235 at 1324.535 kb on + strand, within DVU1235 at 1324.595 kb on - strand, within DVU1235 at 1324.597 kb on + strand, within DVU1235 at 1324.605 kb on - strand, within DVU1235 at 1324.610 kb on - strand, within DVU1235 at 1324.672 kb on + strand, within DVU1235 at 1324.861 kb on + strand at 1324.894 kb on + strand at 1324.989 kb on + strand at 1325.296 kb on + strand at 1325.391 kb on + strand, within DVU1236 at 1325.434 kb on + strand, within DVU1236 at 1325.442 kb on - strand, within DVU1236 at 1325.478 kb on + strand, within DVU1236 at 1325.544 kb on - strand, within DVU1236 at 1325.560 kb on + strand, within DVU1236 at 1325.568 kb on - strand, within DVU1236 at 1325.632 kb on + strand, within DVU1236 at 1325.640 kb on - strand, within DVU1236 at 1325.818 kb on - strand, within DVU1236 at 1325.897 kb on + strand, within DVU1236 at 1325.978 kb on - strand at 1326.149 kb on - strand, within glnP at 1326.363 kb on + strand, within glnP at 1326.400 kb on - strand, within glnP at 1326.409 kb on + strand, within glnP at 1326.431 kb on - strand, within glnP at 1326.879 kb on + strand at 1326.940 kb on + strand, within DVU1238 at 1326.940 kb on + strand, within DVU1238 at 1326.948 kb on - strand, within DVU1238
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM remove 1,324,300 - DVU1235 0.11 -0.1 1,324,310 + DVU1235 0.13 -1.9 1,324,310 + DVU1235 0.13 -0.8 1,324,318 - DVU1235 0.14 -0.8 1,324,413 + DVU1235 0.29 -1.1 1,324,437 + DVU1235 0.33 -2.7 1,324,472 + DVU1235 0.39 -0.1 1,324,477 - DVU1235 0.39 +0.0 1,324,515 + DVU1235 0.46 -0.0 1,324,535 + DVU1235 0.49 +0.3 1,324,535 + DVU1235 0.49 -0.1 1,324,595 - DVU1235 0.58 -0.9 1,324,597 + DVU1235 0.59 -0.1 1,324,605 - DVU1235 0.60 -0.2 1,324,610 - DVU1235 0.61 +0.1 1,324,672 + DVU1235 0.71 +0.7 1,324,861 + -0.2 1,324,894 + +0.4 1,324,989 + -0.4 1,325,296 + +0.5 1,325,391 + DVU1236 0.21 +0.4 1,325,434 + DVU1236 0.27 +0.9 1,325,442 - DVU1236 0.28 -0.4 1,325,478 + DVU1236 0.33 -1.1 1,325,544 - DVU1236 0.42 +2.0 1,325,560 + DVU1236 0.44 +0.0 1,325,568 - DVU1236 0.45 -0.1 1,325,632 + DVU1236 0.54 +0.0 1,325,640 - DVU1236 0.55 +0.3 1,325,818 - DVU1236 0.79 +1.6 1,325,897 + DVU1236 0.89 +1.9 1,325,978 - -0.1 1,326,149 - glnP DVU1237 0.24 +0.2 1,326,363 + glnP DVU1237 0.52 +0.1 1,326,400 - glnP DVU1237 0.57 -0.2 1,326,409 + glnP DVU1237 0.58 -1.3 1,326,431 - glnP DVU1237 0.61 +0.7 1,326,879 + +0.1 1,326,940 + DVU1238 0.14 -4.6 1,326,940 + DVU1238 0.14 +0.1 1,326,948 - DVU1238 0.15 +0.2
Or see this region's nucleotide sequence