Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1236

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1235 and DVU1236 are separated by 379 nucleotidesDVU1236 and glnP overlap by 14 nucleotidesglnP and DVU1238 are separated by 106 nucleotides DVU1235: DVU1235 - hypothetical protein (TIGR), at 1,324,232 to 1,324,852 DVU1235 DVU1236: DVU1236 - amino acid ABC transporter, ATP-binding protein (TIGR), at 1,325,232 to 1,325,975 DVU1236 DVU1237: glnP - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 1,325,962 to 1,326,732 glnP DVU1238: DVU1238 - amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR), at 1,326,839 to 1,327,579 DVU1238 Position (kb) 1325 1326Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1324.300 kb on - strand, within DVU1235at 1324.310 kb on + strand, within DVU1235at 1324.310 kb on + strand, within DVU1235at 1324.318 kb on - strand, within DVU1235at 1324.413 kb on + strand, within DVU1235at 1324.437 kb on + strand, within DVU1235at 1324.472 kb on + strand, within DVU1235at 1324.477 kb on - strand, within DVU1235at 1324.515 kb on + strand, within DVU1235at 1324.535 kb on + strand, within DVU1235at 1324.535 kb on + strand, within DVU1235at 1324.595 kb on - strand, within DVU1235at 1324.597 kb on + strand, within DVU1235at 1324.605 kb on - strand, within DVU1235at 1324.610 kb on - strand, within DVU1235at 1324.672 kb on + strand, within DVU1235at 1324.861 kb on + strandat 1324.894 kb on + strandat 1324.989 kb on + strandat 1325.296 kb on + strandat 1325.391 kb on + strand, within DVU1236at 1325.434 kb on + strand, within DVU1236at 1325.442 kb on - strand, within DVU1236at 1325.478 kb on + strand, within DVU1236at 1325.544 kb on - strand, within DVU1236at 1325.560 kb on + strand, within DVU1236at 1325.568 kb on - strand, within DVU1236at 1325.632 kb on + strand, within DVU1236at 1325.640 kb on - strand, within DVU1236at 1325.818 kb on - strand, within DVU1236at 1325.897 kb on + strand, within DVU1236at 1325.978 kb on - strandat 1326.149 kb on - strand, within glnPat 1326.363 kb on + strand, within glnPat 1326.400 kb on - strand, within glnPat 1326.409 kb on + strand, within glnPat 1326.431 kb on - strand, within glnPat 1326.879 kb on + strandat 1326.940 kb on + strand, within DVU1238at 1326.940 kb on + strand, within DVU1238at 1326.948 kb on - strand, within DVU1238

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
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1,324,300 - DVU1235 0.11 -0.1
1,324,310 + DVU1235 0.13 -1.9
1,324,310 + DVU1235 0.13 -0.8
1,324,318 - DVU1235 0.14 -0.8
1,324,413 + DVU1235 0.29 -1.1
1,324,437 + DVU1235 0.33 -2.7
1,324,472 + DVU1235 0.39 -0.1
1,324,477 - DVU1235 0.39 +0.0
1,324,515 + DVU1235 0.46 -0.0
1,324,535 + DVU1235 0.49 +0.3
1,324,535 + DVU1235 0.49 -0.1
1,324,595 - DVU1235 0.58 -0.9
1,324,597 + DVU1235 0.59 -0.1
1,324,605 - DVU1235 0.60 -0.2
1,324,610 - DVU1235 0.61 +0.1
1,324,672 + DVU1235 0.71 +0.7
1,324,861 + -0.2
1,324,894 + +0.4
1,324,989 + -0.4
1,325,296 + +0.5
1,325,391 + DVU1236 0.21 +0.4
1,325,434 + DVU1236 0.27 +0.9
1,325,442 - DVU1236 0.28 -0.4
1,325,478 + DVU1236 0.33 -1.1
1,325,544 - DVU1236 0.42 +2.0
1,325,560 + DVU1236 0.44 +0.0
1,325,568 - DVU1236 0.45 -0.1
1,325,632 + DVU1236 0.54 +0.0
1,325,640 - DVU1236 0.55 +0.3
1,325,818 - DVU1236 0.79 +1.6
1,325,897 + DVU1236 0.89 +1.9
1,325,978 - -0.1
1,326,149 - glnP DVU1237 0.24 +0.2
1,326,363 + glnP DVU1237 0.52 +0.1
1,326,400 - glnP DVU1237 0.57 -0.2
1,326,409 + glnP DVU1237 0.58 -1.3
1,326,431 - glnP DVU1237 0.61 +0.7
1,326,879 + +0.1
1,326,940 + DVU1238 0.14 -4.6
1,326,940 + DVU1238 0.14 +0.1
1,326,948 - DVU1238 0.15 +0.2

Or see this region's nucleotide sequence