Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1045

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntguaB and DVU1045 are separated by 259 nucleotidesDVU1045 and DVU1046 overlap by 8 nucleotidesDVU1046 and ccmC are separated by 9 nucleotidesccmC and ccmB are separated by 51 nucleotides DVU1044: guaB - inosine-5`-monophosphate dehydrogenase (TIGR), at 1,146,685 to 1,148,142 guaB DVU1045: DVU1045 - hypothetical protein (TIGR), at 1,148,402 to 1,148,998 DVU1045 DVU1046: DVU1046 - hypothetical protein (TIGR), at 1,148,991 to 1,149,128 DVU1046 DVU1047: ccmC - cytochrome c-type biogenesis protein CcmC (TIGR), at 1,149,138 to 1,149,812 ccmC DVU1048: ccmB - cytochrome c-type biogenesis protein CcmB (TIGR), at 1,149,864 to 1,150,541 ccmB Position (kb) 1148 1149Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1148.196 kb on + strandat 1148.373 kb on + strandat 1148.383 kb on + strandat 1148.386 kb on - strandat 1148.391 kb on - strandat 1148.391 kb on - strandat 1148.481 kb on + strand, within DVU1045at 1148.489 kb on - strand, within DVU1045at 1148.499 kb on + strand, within DVU1045at 1148.499 kb on + strand, within DVU1045at 1148.499 kb on + strand, within DVU1045at 1148.507 kb on - strand, within DVU1045at 1148.507 kb on - strand, within DVU1045at 1148.541 kb on + strand, within DVU1045at 1148.637 kb on - strand, within DVU1045at 1148.637 kb on - strand, within DVU1045at 1148.637 kb on - strand, within DVU1045at 1148.637 kb on - strand, within DVU1045at 1148.693 kb on + strand, within DVU1045at 1148.864 kb on - strand, within DVU1045at 1148.865 kb on + strand, within DVU1045at 1148.883 kb on - strand, within DVU1045at 1148.883 kb on - strand, within DVU1045at 1148.893 kb on - strand, within DVU1045at 1148.893 kb on - strand, within DVU1045at 1148.924 kb on + strand, within DVU1045at 1148.924 kb on + strand, within DVU1045at 1148.932 kb on - strand, within DVU1045at 1149.143 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
remove
1,148,196 + +0.3
1,148,373 + -0.8
1,148,383 + +1.0
1,148,386 - +2.0
1,148,391 - -0.6
1,148,391 - -0.0
1,148,481 + DVU1045 0.13 +0.2
1,148,489 - DVU1045 0.15 +2.0
1,148,499 + DVU1045 0.16 -0.4
1,148,499 + DVU1045 0.16 +0.6
1,148,499 + DVU1045 0.16 -0.3
1,148,507 - DVU1045 0.18 +0.1
1,148,507 - DVU1045 0.18 +0.4
1,148,541 + DVU1045 0.23 -0.2
1,148,637 - DVU1045 0.39 +2.0
1,148,637 - DVU1045 0.39 -0.3
1,148,637 - DVU1045 0.39 +0.7
1,148,637 - DVU1045 0.39 +2.0
1,148,693 + DVU1045 0.49 +0.0
1,148,864 - DVU1045 0.77 +0.3
1,148,865 + DVU1045 0.78 +1.4
1,148,883 - DVU1045 0.81 +0.5
1,148,883 - DVU1045 0.81 +0.1
1,148,893 - DVU1045 0.82 -3.1
1,148,893 - DVU1045 0.82 +0.5
1,148,924 + DVU1045 0.87 +1.4
1,148,924 + DVU1045 0.87 +1.8
1,148,932 - DVU1045 0.89 +0.5
1,149,143 - -0.6

Or see this region's nucleotide sequence