Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt guaB and DVU1045 are separated by 259 nucleotides DVU1045 and DVU1046 overlap by 8 nucleotides DVU1046 and ccmC are separated by 9 nucleotides ccmC and ccmB are separated by 51 nucleotides
DVU1044: guaB - inosine-5`-monophosphate dehydrogenase (TIGR), at 1,146,685 to 1,148,142
guaB
DVU1045: DVU1045 - hypothetical protein (TIGR), at 1,148,402 to 1,148,998
DVU1045
DVU1046: DVU1046 - hypothetical protein (TIGR), at 1,148,991 to 1,149,128
DVU1046
DVU1047: ccmC - cytochrome c-type biogenesis protein CcmC (TIGR), at 1,149,138 to 1,149,812
ccmC
DVU1048: ccmB - cytochrome c-type biogenesis protein CcmB (TIGR), at 1,149,864 to 1,150,541
ccmB
Position (kb)
1148
1149 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1148.196 kb on + strand at 1148.373 kb on + strand at 1148.383 kb on + strand at 1148.386 kb on - strand at 1148.391 kb on - strand at 1148.391 kb on - strand at 1148.481 kb on + strand, within DVU1045 at 1148.489 kb on - strand, within DVU1045 at 1148.499 kb on + strand, within DVU1045 at 1148.499 kb on + strand, within DVU1045 at 1148.499 kb on + strand, within DVU1045 at 1148.507 kb on - strand, within DVU1045 at 1148.507 kb on - strand, within DVU1045 at 1148.541 kb on + strand, within DVU1045 at 1148.637 kb on - strand, within DVU1045 at 1148.637 kb on - strand, within DVU1045 at 1148.637 kb on - strand, within DVU1045 at 1148.637 kb on - strand, within DVU1045 at 1148.693 kb on + strand, within DVU1045 at 1148.864 kb on - strand, within DVU1045 at 1148.865 kb on + strand, within DVU1045 at 1148.883 kb on - strand, within DVU1045 at 1148.883 kb on - strand, within DVU1045 at 1148.893 kb on - strand, within DVU1045 at 1148.893 kb on - strand, within DVU1045 at 1148.924 kb on + strand, within DVU1045 at 1148.924 kb on + strand, within DVU1045 at 1148.932 kb on - strand, within DVU1045 at 1149.143 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM remove 1,148,196 + +0.3 1,148,373 + -0.8 1,148,383 + +1.0 1,148,386 - +2.0 1,148,391 - -0.6 1,148,391 - -0.0 1,148,481 + DVU1045 0.13 +0.2 1,148,489 - DVU1045 0.15 +2.0 1,148,499 + DVU1045 0.16 -0.4 1,148,499 + DVU1045 0.16 +0.6 1,148,499 + DVU1045 0.16 -0.3 1,148,507 - DVU1045 0.18 +0.1 1,148,507 - DVU1045 0.18 +0.4 1,148,541 + DVU1045 0.23 -0.2 1,148,637 - DVU1045 0.39 +2.0 1,148,637 - DVU1045 0.39 -0.3 1,148,637 - DVU1045 0.39 +0.7 1,148,637 - DVU1045 0.39 +2.0 1,148,693 + DVU1045 0.49 +0.0 1,148,864 - DVU1045 0.77 +0.3 1,148,865 + DVU1045 0.78 +1.4 1,148,883 - DVU1045 0.81 +0.5 1,148,883 - DVU1045 0.81 +0.1 1,148,893 - DVU1045 0.82 -3.1 1,148,893 - DVU1045 0.82 +0.5 1,148,924 + DVU1045 0.87 +1.4 1,148,924 + DVU1045 0.87 +1.8 1,148,932 - DVU1045 0.89 +0.5 1,149,143 - -0.6
Or see this region's nucleotide sequence