Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0019 and DVUA0020 overlap by 1 nucleotides DVUA0020 and DVUA0020.1 are separated by 154 nucleotides DVUA0020.1 and DVUA0021 are separated by 48 nucleotides
DVUA0019: DVUA0019 - type II DNA modification methyltransferase, putative (TIGR), at 22,786 to 24,444
DVUA0019
DVUA0020: DVUA0020 - type II restriction endonuclease, putative (TIGR), at 24,444 to 25,184
DVUA0020
DVUA0020.1: DVUA0020.1 - SEED: FIG00604339: hypothetical protein, at 25,339 to 26,583
DVUA0020.1
DVUA0021: DVUA0021 - conserved hypothetical protein (TIGR), at 26,632 to 27,693
DVUA0021
Position (kb) 25
26
27 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 24.479 kb on + strand at 24.487 kb on - strand at 24.578 kb on - strand, within DVUA0020 at 24.727 kb on - strand, within DVUA0020 at 24.744 kb on - strand, within DVUA0020 at 24.846 kb on + strand, within DVUA0020 at 24.854 kb on - strand, within DVUA0020 at 24.878 kb on - strand, within DVUA0020 at 24.936 kb on + strand, within DVUA0020 at 24.974 kb on + strand, within DVUA0020 at 25.040 kb on + strand, within DVUA0020 at 25.310 kb on + strand at 25.339 kb on + strand at 25.343 kb on - strand at 25.379 kb on - strand at 25.379 kb on - strand at 25.443 kb on - strand at 25.450 kb on + strand at 25.502 kb on - strand, within DVUA0020.1 at 25.609 kb on - strand, within DVUA0020.1 at 25.713 kb on - strand, within DVUA0020.1 at 25.726 kb on + strand, within DVUA0020.1 at 25.730 kb on - strand, within DVUA0020.1 at 25.751 kb on - strand, within DVUA0020.1 at 25.874 kb on + strand, within DVUA0020.1 at 25.882 kb on - strand, within DVUA0020.1 at 25.882 kb on - strand, within DVUA0020.1 at 25.972 kb on + strand, within DVUA0020.1 at 25.981 kb on - strand, within DVUA0020.1 at 25.981 kb on - strand, within DVUA0020.1 at 26.035 kb on - strand, within DVUA0020.1 at 26.120 kb on + strand, within DVUA0020.1 at 26.136 kb on - strand, within DVUA0020.1 at 26.138 kb on + strand, within DVUA0020.1 at 26.245 kb on - strand, within DVUA0020.1 at 26.270 kb on + strand, within DVUA0020.1 at 26.284 kb on + strand, within DVUA0020.1 at 26.366 kb on + strand, within DVUA0020.1 at 26.369 kb on - strand, within DVUA0020.1 at 26.374 kb on - strand, within DVUA0020.1 at 26.374 kb on - strand, within DVUA0020.1 at 26.384 kb on - strand, within DVUA0020.1 at 26.438 kb on + strand, within DVUA0020.1 at 26.465 kb on + strand at 26.552 kb on + strand at 26.552 kb on + strand at 26.606 kb on + strand at 26.607 kb on - strand at 26.610 kb on + strand at 26.644 kb on + strand at 26.652 kb on - strand at 26.652 kb on - strand at 26.740 kb on + strand, within DVUA0021 at 26.947 kb on + strand, within DVUA0021 at 27.005 kb on - strand, within DVUA0021 at 27.362 kb on - strand, within DVUA0021 at 27.379 kb on - strand, within DVUA0021 at 27.438 kb on - strand, within DVUA0021 at 27.447 kb on - strand, within DVUA0021 at 27.565 kb on + strand, within DVUA0021
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM remove 24,479 + +0.6 24,487 - -0.7 24,578 - DVUA0020 0.18 -1.6 24,727 - DVUA0020 0.38 +0.1 24,744 - DVUA0020 0.40 -0.0 24,846 + DVUA0020 0.54 -2.9 24,854 - DVUA0020 0.55 +0.1 24,878 - DVUA0020 0.59 +0.1 24,936 + DVUA0020 0.66 -0.2 24,974 + DVUA0020 0.72 -3.9 25,040 + DVUA0020 0.80 -1.1 25,310 + -0.1 25,339 + -0.6 25,343 - +0.1 25,379 - +0.6 25,379 - -0.0 25,443 - -0.1 25,450 + -0.5 25,502 - DVUA0020.1 0.13 -0.2 25,609 - DVUA0020.1 0.22 -0.3 25,713 - DVUA0020.1 0.30 +0.9 25,726 + DVUA0020.1 0.31 -1.0 25,730 - DVUA0020.1 0.31 -0.8 25,751 - DVUA0020.1 0.33 -0.4 25,874 + DVUA0020.1 0.43 +0.6 25,882 - DVUA0020.1 0.44 -0.2 25,882 - DVUA0020.1 0.44 +0.0 25,972 + DVUA0020.1 0.51 -0.1 25,981 - DVUA0020.1 0.52 +1.6 25,981 - DVUA0020.1 0.52 +0.3 26,035 - DVUA0020.1 0.56 -0.9 26,120 + DVUA0020.1 0.63 +0.1 26,136 - DVUA0020.1 0.64 +0.0 26,138 + DVUA0020.1 0.64 -0.4 26,245 - DVUA0020.1 0.73 -0.1 26,270 + DVUA0020.1 0.75 -0.6 26,284 + DVUA0020.1 0.76 +0.1 26,366 + DVUA0020.1 0.82 -0.5 26,369 - DVUA0020.1 0.83 -2.6 26,374 - DVUA0020.1 0.83 -0.2 26,374 - DVUA0020.1 0.83 +0.9 26,384 - DVUA0020.1 0.84 -0.2 26,438 + DVUA0020.1 0.88 +1.0 26,465 + -0.1 26,552 + -1.2 26,552 + +0.2 26,606 + +0.1 26,607 - -0.6 26,610 + -0.0 26,644 + -0.0 26,652 - +0.1 26,652 - -0.2 26,740 + DVUA0021 0.10 -0.5 26,947 + DVUA0021 0.30 -1.4 27,005 - DVUA0021 0.35 -0.6 27,362 - DVUA0021 0.69 -0.3 27,379 - DVUA0021 0.70 +0.2 27,438 - DVUA0021 0.76 +0.1 27,447 - DVUA0021 0.77 +0.1 27,565 + DVUA0021 0.88 +0.1
Or see this region's nucleotide sequence