Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF24761

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttopA and DORF24761 are separated by 235 nucleotidesDORF24761 and glnA are separated by 458 nucleotides DVU3389: topA - DNA topoisomerase I (TIGR), at 3,563,643 to 3,565,925 topA DORF24761: DORF24761 - SEED: FIG00604061: hypothetical protein, at 3,566,161 to 3,567,015 DORF24761 DVU3392: glnA - glutamine synthetase, type I (TIGR), at 3,567,474 to 3,568,817 glnA Position (kb) 3566 3567 3568Strain fitness (log2 ratio) -2 -1 0 1 2at 3565.779 kb on + strandat 3565.779 kb on + strandat 3565.787 kb on - strandat 3565.787 kb on - strandat 3566.112 kb on - strandat 3566.171 kb on - strandat 3566.184 kb on + strandat 3566.204 kb on + strandat 3566.204 kb on + strandat 3566.230 kb on + strandat 3566.243 kb on + strandat 3566.329 kb on - strand, within DORF24761at 3566.373 kb on - strand, within DORF24761at 3566.378 kb on + strand, within DORF24761at 3566.417 kb on + strand, within DORF24761at 3566.428 kb on + strand, within DORF24761at 3566.428 kb on + strand, within DORF24761at 3566.546 kb on - strand, within DORF24761at 3566.566 kb on + strand, within DORF24761at 3566.584 kb on + strand, within DORF24761at 3566.597 kb on + strand, within DORF24761at 3566.701 kb on + strand, within DORF24761at 3566.816 kb on - strand, within DORF24761at 3567.026 kb on + strandat 3567.034 kb on - strandat 3567.041 kb on - strandat 3567.161 kb on - strandat 3567.187 kb on - strandat 3567.201 kb on - strandat 3567.219 kb on - strandat 3567.233 kb on + strandat 3567.247 kb on + strandat 3567.313 kb on + strandat 3567.398 kb on - strandat 3567.404 kb on + strandat 3567.450 kb on - strandat 3567.541 kb on - strandat 3567.854 kb on + strand, within glnAat 3567.863 kb on - strand, within glnAat 3567.863 kb on - strand, within glnAat 3567.913 kb on + strand, within glnAat 3567.921 kb on - strand, within glnAat 3567.955 kb on + strand, within glnA

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
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3,565,779 + -1.3
3,565,779 + -1.0
3,565,787 - -0.5
3,565,787 - -1.7
3,566,112 - +0.2
3,566,171 - +1.3
3,566,184 + +1.6
3,566,204 + -0.3
3,566,204 + -2.1
3,566,230 + -0.2
3,566,243 + +1.7
3,566,329 - DORF24761 0.20 +0.5
3,566,373 - DORF24761 0.25 +1.1
3,566,378 + DORF24761 0.25 -0.8
3,566,417 + DORF24761 0.30 +0.0
3,566,428 + DORF24761 0.31 -0.0
3,566,428 + DORF24761 0.31 +1.0
3,566,546 - DORF24761 0.45 -0.1
3,566,566 + DORF24761 0.47 +0.4
3,566,584 + DORF24761 0.49 -0.2
3,566,597 + DORF24761 0.51 -0.3
3,566,701 + DORF24761 0.63 +0.5
3,566,816 - DORF24761 0.77 -1.2
3,567,026 + +0.0
3,567,034 - +0.9
3,567,041 - +0.0
3,567,161 - +0.3
3,567,187 - +0.3
3,567,201 - -1.2
3,567,219 - -0.2
3,567,233 + +1.2
3,567,247 + +2.2
3,567,313 + -0.4
3,567,398 - +0.3
3,567,404 + -0.3
3,567,450 - -1.0
3,567,541 - -0.8
3,567,854 + glnA DVU3392 0.28 -0.9
3,567,863 - glnA DVU3392 0.29 -0.7
3,567,863 - glnA DVU3392 0.29 -1.0
3,567,913 + glnA DVU3392 0.33 -0.7
3,567,921 - glnA DVU3392 0.33 -0.7
3,567,955 + glnA DVU3392 0.36 -1.0

Or see this region's nucleotide sequence