Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt topA and DORF24761 are separated by 235 nucleotides DORF24761 and glnA are separated by 458 nucleotides
DVU3389: topA - DNA topoisomerase I (TIGR), at 3,563,643 to 3,565,925
topA
DORF24761: DORF24761 - SEED: FIG00604061: hypothetical protein, at 3,566,161 to 3,567,015
DORF24761
DVU3392: glnA - glutamine synthetase, type I (TIGR), at 3,567,474 to 3,568,817
glnA
Position (kb)
3566
3567
3568 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3565.779 kb on + strand at 3565.779 kb on + strand at 3565.787 kb on - strand at 3565.787 kb on - strand at 3566.112 kb on - strand at 3566.171 kb on - strand at 3566.184 kb on + strand at 3566.204 kb on + strand at 3566.204 kb on + strand at 3566.230 kb on + strand at 3566.243 kb on + strand at 3566.329 kb on - strand, within DORF24761 at 3566.373 kb on - strand, within DORF24761 at 3566.378 kb on + strand, within DORF24761 at 3566.417 kb on + strand, within DORF24761 at 3566.428 kb on + strand, within DORF24761 at 3566.428 kb on + strand, within DORF24761 at 3566.546 kb on - strand, within DORF24761 at 3566.566 kb on + strand, within DORF24761 at 3566.584 kb on + strand, within DORF24761 at 3566.597 kb on + strand, within DORF24761 at 3566.701 kb on + strand, within DORF24761 at 3566.816 kb on - strand, within DORF24761 at 3567.026 kb on + strand at 3567.034 kb on - strand at 3567.041 kb on - strand at 3567.161 kb on - strand at 3567.187 kb on - strand at 3567.201 kb on - strand at 3567.219 kb on - strand at 3567.233 kb on + strand at 3567.247 kb on + strand at 3567.313 kb on + strand at 3567.398 kb on - strand at 3567.404 kb on + strand at 3567.450 kb on - strand at 3567.541 kb on - strand at 3567.854 kb on + strand, within glnA at 3567.863 kb on - strand, within glnA at 3567.863 kb on - strand, within glnA at 3567.913 kb on + strand, within glnA at 3567.921 kb on - strand, within glnA at 3567.955 kb on + strand, within glnA
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM remove 3,565,779 + -1.3 3,565,779 + -1.0 3,565,787 - -0.5 3,565,787 - -1.7 3,566,112 - +0.2 3,566,171 - +1.3 3,566,184 + +1.6 3,566,204 + -0.3 3,566,204 + -2.1 3,566,230 + -0.2 3,566,243 + +1.7 3,566,329 - DORF24761 0.20 +0.5 3,566,373 - DORF24761 0.25 +1.1 3,566,378 + DORF24761 0.25 -0.8 3,566,417 + DORF24761 0.30 +0.0 3,566,428 + DORF24761 0.31 -0.0 3,566,428 + DORF24761 0.31 +1.0 3,566,546 - DORF24761 0.45 -0.1 3,566,566 + DORF24761 0.47 +0.4 3,566,584 + DORF24761 0.49 -0.2 3,566,597 + DORF24761 0.51 -0.3 3,566,701 + DORF24761 0.63 +0.5 3,566,816 - DORF24761 0.77 -1.2 3,567,026 + +0.0 3,567,034 - +0.9 3,567,041 - +0.0 3,567,161 - +0.3 3,567,187 - +0.3 3,567,201 - -1.2 3,567,219 - -0.2 3,567,233 + +1.2 3,567,247 + +2.2 3,567,313 + -0.4 3,567,398 - +0.3 3,567,404 + -0.3 3,567,450 - -1.0 3,567,541 - -0.8 3,567,854 + glnA DVU3392 0.28 -0.9 3,567,863 - glnA DVU3392 0.29 -0.7 3,567,863 - glnA DVU3392 0.29 -1.0 3,567,913 + glnA DVU3392 0.33 -0.7 3,567,921 - glnA DVU3392 0.33 -0.7 3,567,955 + glnA DVU3392 0.36 -1.0
Or see this region's nucleotide sequence