Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF9585

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1148 and DORF9582 are separated by 593 nucleotidesDORF9582 and DORF9585 are separated by 81 nucleotidesDORF9585 and DVU1151 are separated by 452 nucleotidesDVU1151 and DVU1152 are separated by 124 nucleotides DVU1148: DVU1148 - conserved hypothetical protein (TIGR), at 1,243,218 to 1,244,264 DVU1148 DORF9582: DORF9582 - no description, at 1,244,858 to 1,245,076 DORF9582 DORF9585: DORF9585 - no description, at 1,245,158 to 1,245,361 DORF9585 DVU1151: DVU1151 - hypothetical protein (TIGR), at 1,245,814 to 1,245,966 DVU1151 DVU1152: DVU1152 - hypothetical protein (TIGR), at 1,246,091 to 1,246,705 DVU1152 Position (kb) 1245 1246Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1244.160 kb on + strandat 1244.168 kb on - strandat 1244.313 kb on + strandat 1244.340 kb on + strandat 1244.369 kb on + strandat 1244.410 kb on + strandat 1244.410 kb on + strandat 1244.410 kb on + strandat 1244.410 kb on + strandat 1244.410 kb on + strandat 1244.410 kb on + strandat 1244.418 kb on - strandat 1244.457 kb on - strandat 1244.546 kb on + strandat 1244.570 kb on - strandat 1244.588 kb on + strandat 1244.588 kb on + strandat 1244.588 kb on + strandat 1244.588 kb on + strandat 1244.589 kb on + strandat 1244.589 kb on + strandat 1244.596 kb on - strandat 1244.596 kb on - strandat 1244.596 kb on - strandat 1244.596 kb on - strandat 1244.596 kb on - strandat 1244.597 kb on - strandat 1244.616 kb on - strandat 1244.616 kb on - strandat 1244.638 kb on - strandat 1244.663 kb on - strandat 1244.733 kb on - strandat 1244.833 kb on - strandat 1244.845 kb on + strandat 1244.896 kb on - strand, within DORF9582at 1244.953 kb on + strand, within DORF9582at 1244.999 kb on + strand, within DORF9582at 1245.031 kb on - strand, within DORF9582at 1245.031 kb on - strand, within DORF9582at 1245.136 kb on + strandat 1245.210 kb on - strand, within DORF9585at 1245.401 kb on - strandat 1245.507 kb on + strandat 1245.550 kb on + strandat 1245.552 kb on + strandat 1245.627 kb on - strandat 1245.757 kb on + strandat 1245.758 kb on + strandat 1245.758 kb on + strandat 1245.765 kb on - strandat 1245.765 kb on - strandat 1245.765 kb on - strandat 1246.030 kb on - strandat 1246.048 kb on - strandat 1246.101 kb on - strandat 1246.128 kb on - strandat 1246.176 kb on + strand, within DVU1152at 1246.176 kb on + strand, within DVU1152at 1246.176 kb on + strand, within DVU1152at 1246.176 kb on + strand, within DVU1152at 1246.184 kb on - strand, within DVU1152at 1246.184 kb on - strand, within DVU1152at 1246.291 kb on + strand, within DVU1152

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
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1,244,160 + -0.5
1,244,168 - -0.2
1,244,313 + -1.7
1,244,340 + +0.9
1,244,369 + -0.0
1,244,410 + -0.5
1,244,410 + +0.3
1,244,410 + -0.4
1,244,410 + +0.7
1,244,410 + +1.3
1,244,410 + +0.7
1,244,418 - -0.2
1,244,457 - +0.6
1,244,546 + +0.0
1,244,570 - -0.0
1,244,588 + -0.0
1,244,588 + -0.5
1,244,588 + -0.2
1,244,588 + +2.0
1,244,589 + -0.1
1,244,589 + -0.1
1,244,596 - +0.1
1,244,596 - +1.1
1,244,596 - +0.1
1,244,596 - -1.3
1,244,596 - -0.2
1,244,597 - +0.2
1,244,616 - -0.2
1,244,616 - -0.1
1,244,638 - -0.2
1,244,663 - -0.8
1,244,733 - -0.2
1,244,833 - +1.4
1,244,845 + -0.3
1,244,896 - DORF9582 0.17 -0.2
1,244,953 + DORF9582 0.43 +0.1
1,244,999 + DORF9582 0.64 -0.3
1,245,031 - DORF9582 0.79 -0.6
1,245,031 - DORF9582 0.79 -1.4
1,245,136 + -0.4
1,245,210 - DORF9585 0.25 +0.3
1,245,401 - -0.9
1,245,507 + +0.1
1,245,550 + -2.0
1,245,552 + -1.1
1,245,627 - -0.0
1,245,757 + -1.2
1,245,758 + +0.1
1,245,758 + +0.4
1,245,765 - -0.3
1,245,765 - -0.3
1,245,765 - +0.0
1,246,030 - -3.7
1,246,048 - -0.9
1,246,101 - +1.5
1,246,128 - +1.8
1,246,176 + DVU1152 0.14 -2.3
1,246,176 + DVU1152 0.14 -0.4
1,246,176 + DVU1152 0.14 +1.9
1,246,176 + DVU1152 0.14 -0.0
1,246,184 - DVU1152 0.15 -0.2
1,246,184 - DVU1152 0.15 -1.4
1,246,291 + DVU1152 0.33 -0.1

Or see this region's nucleotide sequence