Experiment: control, 1x iron with casaminos and vitamins, formate media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02595 and MMP_RS02600 are separated by 302 nucleotides MMP_RS02600 and MMP_RS02605 overlap by 7 nucleotides MMP_RS02605 and MMP_RS02610 overlap by 1 nucleotides
MMP_RS02595: MMP_RS02595 - putative zinc-binding protein, at 486,425 to 486,886
_RS02595
MMP_RS02600: MMP_RS02600 - DUF2149 domain-containing protein, at 487,189 to 487,527
_RS02600
MMP_RS02605: MMP_RS02605 - MotA/TolQ/ExbB proton channel family protein, at 487,521 to 488,162
_RS02605
MMP_RS02610: MMP_RS02610 - DUF2162 domain-containing protein, at 488,162 to 488,881
_RS02610
Position (kb) 487
488
489 Strain fitness (log2 ratio) -1
0
1 at 486.712 kb on - strand, within MMP_RS02595 at 486.886 kb on - strand at 486.890 kb on - strand at 486.929 kb on - strand at 486.934 kb on - strand at 486.937 kb on - strand at 486.937 kb on - strand at 486.938 kb on + strand at 486.981 kb on + strand at 486.987 kb on - strand at 486.987 kb on - strand at 486.987 kb on - strand at 486.987 kb on - strand at 486.987 kb on - strand at 486.988 kb on + strand at 486.988 kb on + strand at 486.988 kb on + strand at 486.988 kb on + strand at 486.988 kb on + strand at 487.065 kb on - strand at 487.066 kb on + strand at 487.072 kb on - strand at 487.073 kb on + strand at 487.073 kb on + strand at 487.083 kb on - strand at 487.090 kb on - strand at 487.090 kb on - strand at 487.090 kb on - strand at 487.090 kb on - strand at 487.090 kb on - strand at 487.091 kb on + strand at 487.094 kb on - strand at 487.094 kb on - strand at 487.095 kb on + strand at 487.209 kb on - strand at 487.979 kb on - strand, within MMP_RS02605 at 488.214 kb on - strand at 488.219 kb on - strand at 488.219 kb on - strand at 488.219 kb on - strand at 488.278 kb on + strand, within MMP_RS02610 at 488.660 kb on - strand, within MMP_RS02610 at 488.762 kb on - strand, within MMP_RS02610 at 488.762 kb on - strand, within MMP_RS02610 at 488.769 kb on + strand, within MMP_RS02610 at 488.921 kb on + strand at 489.039 kb on - strand at 489.095 kb on - strand at 489.115 kb on + strand at 489.115 kb on + strand at 489.115 kb on + strand at 489.118 kb on + strand at 489.119 kb on - strand at 489.120 kb on + strand at 489.121 kb on - strand at 489.136 kb on + strand at 489.137 kb on - strand at 489.137 kb on - strand at 489.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction control, 1x iron with casaminos and vitamins, formate media remove 486,712 - MMP_RS02595 0.62 +0.1 486,886 - +0.8 486,890 - -0.0 486,929 - -0.3 486,934 - +0.4 486,937 - +0.3 486,937 - -0.5 486,938 + +1.1 486,981 + +0.4 486,987 - +0.1 486,987 - -0.1 486,987 - +0.1 486,987 - +0.3 486,987 - -0.1 486,988 + +0.6 486,988 + +1.1 486,988 + +0.0 486,988 + +0.9 486,988 + -0.2 487,065 - +0.6 487,066 + -0.0 487,072 - +0.7 487,073 + +0.0 487,073 + -1.1 487,083 - -1.1 487,090 - +0.1 487,090 - +0.2 487,090 - +0.5 487,090 - -0.2 487,090 - -0.8 487,091 + -0.3 487,094 - +0.4 487,094 - +0.2 487,095 + +0.2 487,209 - +0.6 487,979 - MMP_RS02605 0.71 -0.9 488,214 - +0.2 488,219 - +0.2 488,219 - +0.3 488,219 - -0.3 488,278 + MMP_RS02610 0.16 -0.1 488,660 - MMP_RS02610 0.69 -0.5 488,762 - MMP_RS02610 0.83 -0.1 488,762 - MMP_RS02610 0.83 -0.4 488,769 + MMP_RS02610 0.84 -0.2 488,921 + +0.4 489,039 - +0.8 489,095 - +0.2 489,115 + +0.1 489,115 + +0.3 489,115 + +0.1 489,118 + +0.2 489,119 - +0.3 489,120 + -1.5 489,121 - -0.2 489,136 + -0.3 489,137 - +0.1 489,137 - +0.6 489,148 - +0.4
Or see this region's nucleotide sequence