Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01305

Experiment: control, 1x iron with casaminos and vitamins, formate media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01290 and MMP_RS01295 overlap by 23 nucleotidesMMP_RS01295 and MMP_RS01300 are separated by 51 nucleotidesMMP_RS01300 and MMP_RS01305 are separated by 1 nucleotidesMMP_RS01305 and MMP_RS01310 overlap by 20 nucleotidesMMP_RS01310 and MMP_RS01315 are separated by 3 nucleotides MMP_RS01290: MMP_RS01290 - class III signal peptide-containing protein, at 243,562 to 243,960 _RS01290 MMP_RS01295: MMP_RS01295 - hypothetical protein, at 243,938 to 244,393 _RS01295 MMP_RS01300: MMP_RS01300 - hypothetical protein, at 244,445 to 244,930 _RS01300 MMP_RS01305: MMP_RS01305 - hypothetical protein, at 244,932 to 245,789 _RS01305 MMP_RS01310: MMP_RS01310 - hypothetical protein, at 245,770 to 246,333 _RS01310 MMP_RS01315: MMP_RS01315 - DUF2341 domain-containing protein, at 246,337 to 248,100 _RS01315 Position (kb) 244 245 246Strain fitness (log2 ratio) -2 -1 0 1at 243.999 kb on - strand, within MMP_RS01295at 244.000 kb on + strand, within MMP_RS01295at 244.131 kb on + strand, within MMP_RS01295at 244.185 kb on + strand, within MMP_RS01295at 244.189 kb on - strand, within MMP_RS01295at 244.189 kb on - strand, within MMP_RS01295at 244.190 kb on + strand, within MMP_RS01295at 244.190 kb on + strand, within MMP_RS01295at 244.190 kb on + strand, within MMP_RS01295at 244.191 kb on - strand, within MMP_RS01295at 244.214 kb on + strand, within MMP_RS01295at 244.229 kb on + strand, within MMP_RS01295at 244.288 kb on - strand, within MMP_RS01295at 244.313 kb on + strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.337 kb on + strand, within MMP_RS01295at 244.337 kb on + strand, within MMP_RS01295at 244.381 kb on - strandat 244.407 kb on + strandat 244.414 kb on + strandat 244.439 kb on - strandat 244.441 kb on - strandat 244.471 kb on - strandat 244.472 kb on + strandat 244.491 kb on - strandat 244.534 kb on + strand, within MMP_RS01300at 244.588 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.607 kb on + strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.611 kb on + strand, within MMP_RS01300at 244.611 kb on + strand, within MMP_RS01300at 244.611 kb on + strand, within MMP_RS01300at 244.612 kb on - strand, within MMP_RS01300at 244.612 kb on - strand, within MMP_RS01300at 244.612 kb on - strand, within MMP_RS01300at 244.612 kb on - strand, within MMP_RS01300at 244.612 kb on - strand, within MMP_RS01300at 244.613 kb on + strand, within MMP_RS01300at 244.613 kb on + strand, within MMP_RS01300at 244.613 kb on + strand, within MMP_RS01300at 244.614 kb on - strand, within MMP_RS01300at 244.614 kb on - strand, within MMP_RS01300at 244.615 kb on + strand, within MMP_RS01300at 244.615 kb on + strand, within MMP_RS01300at 244.623 kb on + strand, within MMP_RS01300at 244.623 kb on + strand, within MMP_RS01300at 244.653 kb on - strand, within MMP_RS01300at 244.653 kb on - strand, within MMP_RS01300at 244.664 kb on + strand, within MMP_RS01300at 244.664 kb on + strand, within MMP_RS01300at 244.667 kb on - strand, within MMP_RS01300at 244.733 kb on + strand, within MMP_RS01300at 244.735 kb on - strand, within MMP_RS01300at 244.735 kb on - strand, within MMP_RS01300at 244.742 kb on + strand, within MMP_RS01300at 244.798 kb on - strand, within MMP_RS01300at 244.798 kb on - strand, within MMP_RS01300at 244.799 kb on + strand, within MMP_RS01300at 244.980 kb on - strandat 245.022 kb on - strand, within MMP_RS01305at 245.133 kb on - strand, within MMP_RS01305at 245.151 kb on - strand, within MMP_RS01305at 245.154 kb on - strand, within MMP_RS01305at 245.154 kb on - strand, within MMP_RS01305at 245.154 kb on - strand, within MMP_RS01305at 245.155 kb on + strand, within MMP_RS01305at 245.155 kb on + strand, within MMP_RS01305at 245.155 kb on + strand, within MMP_RS01305at 245.155 kb on + strand, within MMP_RS01305at 245.203 kb on + strand, within MMP_RS01305at 245.203 kb on + strand, within MMP_RS01305at 245.242 kb on - strand, within MMP_RS01305at 245.248 kb on + strand, within MMP_RS01305at 245.253 kb on + strand, within MMP_RS01305at 245.266 kb on - strand, within MMP_RS01305at 245.266 kb on - strand, within MMP_RS01305at 245.266 kb on - strand, within MMP_RS01305at 245.266 kb on - strand, within MMP_RS01305at 245.267 kb on + strand, within MMP_RS01305at 245.271 kb on - strand, within MMP_RS01305at 245.274 kb on - strand, within MMP_RS01305at 245.293 kb on + strand, within MMP_RS01305at 245.297 kb on - strand, within MMP_RS01305at 245.298 kb on + strand, within MMP_RS01305at 245.298 kb on + strand, within MMP_RS01305at 245.339 kb on - strand, within MMP_RS01305at 245.435 kb on - strand, within MMP_RS01305at 245.436 kb on + strand, within MMP_RS01305at 245.436 kb on + strand, within MMP_RS01305at 245.436 kb on + strand, within MMP_RS01305at 245.436 kb on + strand, within MMP_RS01305at 245.509 kb on - strand, within MMP_RS01305at 245.560 kb on - strand, within MMP_RS01305at 245.560 kb on - strand, within MMP_RS01305at 245.561 kb on + strand, within MMP_RS01305at 245.621 kb on - strand, within MMP_RS01305at 245.621 kb on - strand, within MMP_RS01305at 245.621 kb on - strand, within MMP_RS01305at 245.621 kb on - strand, within MMP_RS01305at 245.622 kb on + strand, within MMP_RS01305at 245.625 kb on - strand, within MMP_RS01305at 245.625 kb on - strand, within MMP_RS01305at 245.626 kb on + strand, within MMP_RS01305at 245.626 kb on + strand, within MMP_RS01305at 245.626 kb on + strand, within MMP_RS01305at 245.626 kb on + strand, within MMP_RS01305at 245.701 kb on - strand, within MMP_RS01305at 245.706 kb on + strandat 245.706 kb on + strandat 245.710 kb on + strandat 245.720 kb on - strandat 245.754 kb on - strandat 245.754 kb on - strandat 245.761 kb on - strandat 245.822 kb on - strandat 245.822 kb on - strandat 245.823 kb on + strandat 245.861 kb on + strand, within MMP_RS01310at 245.893 kb on - strand, within MMP_RS01310at 245.894 kb on + strand, within MMP_RS01310at 245.894 kb on + strand, within MMP_RS01310at 245.901 kb on - strand, within MMP_RS01310at 245.902 kb on + strand, within MMP_RS01310at 245.902 kb on + strand, within MMP_RS01310at 245.905 kb on + strand, within MMP_RS01310at 245.906 kb on - strand, within MMP_RS01310at 245.907 kb on + strand, within MMP_RS01310at 245.929 kb on + strand, within MMP_RS01310at 245.933 kb on - strand, within MMP_RS01310at 245.934 kb on + strand, within MMP_RS01310at 245.945 kb on - strand, within MMP_RS01310at 245.946 kb on + strand, within MMP_RS01310at 245.971 kb on + strand, within MMP_RS01310at 245.991 kb on - strand, within MMP_RS01310at 245.998 kb on + strand, within MMP_RS01310at 246.052 kb on + strand, within MMP_RS01310at 246.055 kb on - strand, within MMP_RS01310at 246.055 kb on - strand, within MMP_RS01310at 246.055 kb on - strand, within MMP_RS01310at 246.056 kb on + strand, within MMP_RS01310at 246.060 kb on + strand, within MMP_RS01310at 246.124 kb on + strand, within MMP_RS01310at 246.136 kb on + strand, within MMP_RS01310at 246.157 kb on - strand, within MMP_RS01310at 246.233 kb on + strand, within MMP_RS01310at 246.281 kb on + strandat 246.300 kb on - strandat 246.314 kb on - strandat 246.314 kb on - strandat 246.359 kb on - strandat 246.403 kb on + strandat 246.403 kb on + strandat 246.403 kb on + strandat 246.410 kb on - strandat 246.411 kb on + strandat 246.416 kb on - strandat 246.517 kb on + strand, within MMP_RS01315at 246.520 kb on + strand, within MMP_RS01315at 246.527 kb on - strand, within MMP_RS01315at 246.566 kb on + strand, within MMP_RS01315at 246.604 kb on - strand, within MMP_RS01315at 246.643 kb on + strand, within MMP_RS01315at 246.644 kb on - strand, within MMP_RS01315at 246.702 kb on - strand, within MMP_RS01315at 246.703 kb on + strand, within MMP_RS01315at 246.720 kb on - strand, within MMP_RS01315at 246.720 kb on - strand, within MMP_RS01315at 246.736 kb on - strand, within MMP_RS01315at 246.743 kb on - strand, within MMP_RS01315at 246.751 kb on - strand, within MMP_RS01315at 246.751 kb on - strand, within MMP_RS01315at 246.751 kb on - strand, within MMP_RS01315at 246.752 kb on + strand, within MMP_RS01315at 246.752 kb on + strand, within MMP_RS01315at 246.770 kb on - strand, within MMP_RS01315at 246.770 kb on - strand, within MMP_RS01315at 246.770 kb on - strand, within MMP_RS01315at 246.771 kb on + strand, within MMP_RS01315at 246.771 kb on + strand, within MMP_RS01315at 246.771 kb on + strand, within MMP_RS01315at 246.772 kb on - strand, within MMP_RS01315at 246.772 kb on - strand, within MMP_RS01315

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction control, 1x iron with casaminos and vitamins, formate media
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243,999 - MMP_RS01295 0.13 -1.2
244,000 + MMP_RS01295 0.14 -0.3
244,131 + MMP_RS01295 0.42 -0.3
244,185 + MMP_RS01295 0.54 -0.6
244,189 - MMP_RS01295 0.55 -0.7
244,189 - MMP_RS01295 0.55 -0.7
244,190 + MMP_RS01295 0.55 -0.6
244,190 + MMP_RS01295 0.55 -1.1
244,190 + MMP_RS01295 0.55 -1.0
244,191 - MMP_RS01295 0.55 -0.6
244,214 + MMP_RS01295 0.61 -0.9
244,229 + MMP_RS01295 0.64 -1.1
244,288 - MMP_RS01295 0.77 -0.4
244,313 + MMP_RS01295 0.82 -0.2
244,336 - MMP_RS01295 0.87 -0.6
244,336 - MMP_RS01295 0.87 -0.5
244,336 - MMP_RS01295 0.87 -0.2
244,336 - MMP_RS01295 0.87 -0.5
244,336 - MMP_RS01295 0.87 -0.4
244,337 + MMP_RS01295 0.88 +0.6
244,337 + MMP_RS01295 0.88 -0.3
244,381 - -0.1
244,407 + +0.1
244,414 + +0.7
244,439 - +0.3
244,441 - +0.3
244,471 - -0.2
244,472 + +0.2
244,491 - -0.4
244,534 + MMP_RS01300 0.18 +0.6
244,588 - MMP_RS01300 0.29 +0.5
244,606 - MMP_RS01300 0.33 -0.4
244,606 - MMP_RS01300 0.33 -0.4
244,606 - MMP_RS01300 0.33 +0.1
244,606 - MMP_RS01300 0.33 -0.1
244,606 - MMP_RS01300 0.33 -0.1
244,606 - MMP_RS01300 0.33 -0.1
244,607 + MMP_RS01300 0.33 -0.8
244,610 - MMP_RS01300 0.34 -0.3
244,610 - MMP_RS01300 0.34 -0.2
244,610 - MMP_RS01300 0.34 -0.3
244,610 - MMP_RS01300 0.34 -0.4
244,610 - MMP_RS01300 0.34 -0.5
244,610 - MMP_RS01300 0.34 -0.0
244,610 - MMP_RS01300 0.34 -1.1
244,610 - MMP_RS01300 0.34 +0.3
244,611 + MMP_RS01300 0.34 -0.4
244,611 + MMP_RS01300 0.34 +0.7
244,611 + MMP_RS01300 0.34 +0.4
244,612 - MMP_RS01300 0.34 +0.2
244,612 - MMP_RS01300 0.34 -0.8
244,612 - MMP_RS01300 0.34 -0.2
244,612 - MMP_RS01300 0.34 -2.4
244,612 - MMP_RS01300 0.34 -0.0
244,613 + MMP_RS01300 0.35 +0.3
244,613 + MMP_RS01300 0.35 +0.1
244,613 + MMP_RS01300 0.35 -0.9
244,614 - MMP_RS01300 0.35 -0.8
244,614 - MMP_RS01300 0.35 +0.6
244,615 + MMP_RS01300 0.35 +0.2
244,615 + MMP_RS01300 0.35 +0.0
244,623 + MMP_RS01300 0.37 +0.4
244,623 + MMP_RS01300 0.37 -0.0
244,653 - MMP_RS01300 0.43 -0.3
244,653 - MMP_RS01300 0.43 -0.5
244,664 + MMP_RS01300 0.45 +0.4
244,664 + MMP_RS01300 0.45 -1.2
244,667 - MMP_RS01300 0.46 -0.0
244,733 + MMP_RS01300 0.59 +0.6
244,735 - MMP_RS01300 0.60 +0.0
244,735 - MMP_RS01300 0.60 +0.3
244,742 + MMP_RS01300 0.61 +0.3
244,798 - MMP_RS01300 0.73 -0.2
244,798 - MMP_RS01300 0.73 +0.5
244,799 + MMP_RS01300 0.73 +0.8
244,980 - -0.4
245,022 - MMP_RS01305 0.10 -0.9
245,133 - MMP_RS01305 0.23 -0.8
245,151 - MMP_RS01305 0.26 -0.6
245,154 - MMP_RS01305 0.26 -1.1
245,154 - MMP_RS01305 0.26 -1.1
245,154 - MMP_RS01305 0.26 -0.7
245,155 + MMP_RS01305 0.26 -0.9
245,155 + MMP_RS01305 0.26 -0.9
245,155 + MMP_RS01305 0.26 -0.1
245,155 + MMP_RS01305 0.26 -1.3
245,203 + MMP_RS01305 0.32 -0.8
245,203 + MMP_RS01305 0.32 -0.6
245,242 - MMP_RS01305 0.36 -0.6
245,248 + MMP_RS01305 0.37 -1.0
245,253 + MMP_RS01305 0.37 -0.6
245,266 - MMP_RS01305 0.39 -1.4
245,266 - MMP_RS01305 0.39 -1.3
245,266 - MMP_RS01305 0.39 -1.2
245,266 - MMP_RS01305 0.39 -0.4
245,267 + MMP_RS01305 0.39 -0.9
245,271 - MMP_RS01305 0.40 -0.6
245,274 - MMP_RS01305 0.40 -0.2
245,293 + MMP_RS01305 0.42 -0.3
245,297 - MMP_RS01305 0.43 -0.7
245,298 + MMP_RS01305 0.43 -1.0
245,298 + MMP_RS01305 0.43 -0.8
245,339 - MMP_RS01305 0.47 -0.2
245,435 - MMP_RS01305 0.59 -1.0
245,436 + MMP_RS01305 0.59 -1.1
245,436 + MMP_RS01305 0.59 -1.2
245,436 + MMP_RS01305 0.59 -0.8
245,436 + MMP_RS01305 0.59 -0.4
245,509 - MMP_RS01305 0.67 -1.4
245,560 - MMP_RS01305 0.73 -1.1
245,560 - MMP_RS01305 0.73 -0.8
245,561 + MMP_RS01305 0.73 -0.2
245,621 - MMP_RS01305 0.80 -1.3
245,621 - MMP_RS01305 0.80 -0.5
245,621 - MMP_RS01305 0.80 -0.6
245,621 - MMP_RS01305 0.80 -0.3
245,622 + MMP_RS01305 0.80 -1.3
245,625 - MMP_RS01305 0.81 -0.9
245,625 - MMP_RS01305 0.81 +0.2
245,626 + MMP_RS01305 0.81 -0.6
245,626 + MMP_RS01305 0.81 -0.7
245,626 + MMP_RS01305 0.81 -1.5
245,626 + MMP_RS01305 0.81 -0.5
245,701 - MMP_RS01305 0.90 -0.3
245,706 + -1.3
245,706 + -0.6
245,710 + -0.3
245,720 - -0.8
245,754 - -0.1
245,754 - -1.1
245,761 - -0.8
245,822 - -1.0
245,822 - -0.3
245,823 + -1.0
245,861 + MMP_RS01310 0.16 -0.7
245,893 - MMP_RS01310 0.22 -0.7
245,894 + MMP_RS01310 0.22 -1.0
245,894 + MMP_RS01310 0.22 -0.7
245,901 - MMP_RS01310 0.23 -0.6
245,902 + MMP_RS01310 0.23 -0.6
245,902 + MMP_RS01310 0.23 -0.7
245,905 + MMP_RS01310 0.24 -1.7
245,906 - MMP_RS01310 0.24 -0.6
245,907 + MMP_RS01310 0.24 -0.7
245,929 + MMP_RS01310 0.28 -0.4
245,933 - MMP_RS01310 0.29 -0.8
245,934 + MMP_RS01310 0.29 -1.0
245,945 - MMP_RS01310 0.31 -0.9
245,946 + MMP_RS01310 0.31 -1.0
245,971 + MMP_RS01310 0.36 -0.9
245,991 - MMP_RS01310 0.39 -0.4
245,998 + MMP_RS01310 0.40 -1.1
246,052 + MMP_RS01310 0.50 -0.7
246,055 - MMP_RS01310 0.51 -0.3
246,055 - MMP_RS01310 0.51 -0.7
246,055 - MMP_RS01310 0.51 -0.8
246,056 + MMP_RS01310 0.51 -0.7
246,060 + MMP_RS01310 0.51 -0.8
246,124 + MMP_RS01310 0.63 -0.2
246,136 + MMP_RS01310 0.65 -0.5
246,157 - MMP_RS01310 0.69 -0.4
246,233 + MMP_RS01310 0.82 -1.1
246,281 + -0.6
246,300 - -0.6
246,314 - -0.3
246,314 - -0.2
246,359 - -0.6
246,403 + -1.0
246,403 + -0.8
246,403 + -0.7
246,410 - -1.3
246,411 + -0.5
246,416 - -0.5
246,517 + MMP_RS01315 0.10 -0.6
246,520 + MMP_RS01315 0.10 -0.5
246,527 - MMP_RS01315 0.11 -0.9
246,566 + MMP_RS01315 0.13 -0.2
246,604 - MMP_RS01315 0.15 -0.9
246,643 + MMP_RS01315 0.17 -0.6
246,644 - MMP_RS01315 0.17 -1.2
246,702 - MMP_RS01315 0.21 -0.5
246,703 + MMP_RS01315 0.21 -0.1
246,720 - MMP_RS01315 0.22 -0.7
246,720 - MMP_RS01315 0.22 -0.8
246,736 - MMP_RS01315 0.23 -1.1
246,743 - MMP_RS01315 0.23 -0.8
246,751 - MMP_RS01315 0.23 +0.1
246,751 - MMP_RS01315 0.23 -1.0
246,751 - MMP_RS01315 0.23 -0.5
246,752 + MMP_RS01315 0.24 -0.8
246,752 + MMP_RS01315 0.24 -0.8
246,770 - MMP_RS01315 0.25 -0.8
246,770 - MMP_RS01315 0.25 -0.9
246,770 - MMP_RS01315 0.25 -1.7
246,771 + MMP_RS01315 0.25 -1.0
246,771 + MMP_RS01315 0.25 -1.1
246,771 + MMP_RS01315 0.25 -1.0
246,772 - MMP_RS01315 0.25 -1.1
246,772 - MMP_RS01315 0.25 -1.2

Or see this region's nucleotide sequence