Strain Fitness in Pantoea sp. MT58 around IAI47_12075

Experiment: Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_12065 and IAI47_12070 are separated by 154 nucleotidesIAI47_12070 and IAI47_12075 are separated by 10 nucleotidesIAI47_12075 and IAI47_12080 are separated by 16 nucleotidesIAI47_12080 and IAI47_12085 are separated by 0 nucleotides IAI47_12065: IAI47_12065 - acyl carrier protein, at 2,555,258 to 2,555,494 _12065 IAI47_12070: IAI47_12070 - 3-oxoacyl-ACP reductase FabG, at 2,555,649 to 2,556,383 _12070 IAI47_12075: IAI47_12075 - ACP S-malonyltransferase, at 2,556,394 to 2,557,326 _12075 IAI47_12080: IAI47_12080 - ketoacyl-ACP synthase III, at 2,557,343 to 2,558,296 _12080 IAI47_12085: IAI47_12085 - phosphate acyltransferase PlsX, at 2,558,297 to 2,559,337 _12085 Position (kb) 2556 2557 2558Strain fitness (log2 ratio) -1 0 1 2 3 4at 2555.603 kb on - strandat 2555.647 kb on + strandat 2555.648 kb on - strandat 2555.648 kb on - strandat 2555.648 kb on - strandat 2555.660 kb on - strandat 2555.660 kb on - strandat 2556.396 kb on - strandat 2556.396 kb on - strandat 2556.430 kb on - strandat 2556.430 kb on - strandat 2558.319 kb on - strandat 2558.322 kb on - strandat 2558.322 kb on - strandat 2558.322 kb on - strandat 2558.322 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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2,555,603 - +0.6
2,555,647 + +0.4
2,555,648 - +2.0
2,555,648 - +1.4
2,555,648 - +0.6
2,555,660 - +0.7
2,555,660 - +1.6
2,556,396 - -1.4
2,556,396 - +1.5
2,556,430 - +0.1
2,556,430 - +4.1
2,558,319 - +0.5
2,558,322 - +1.0
2,558,322 - +1.6
2,558,322 - +1.4
2,558,322 - +1.1

Or see this region's nucleotide sequence