Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06424

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06422 and H281DRAFT_06423 are separated by 66 nucleotidesH281DRAFT_06423 and H281DRAFT_06424 are separated by 54 nucleotidesH281DRAFT_06424 and H281DRAFT_06425 are separated by 729 nucleotides H281DRAFT_06422: H281DRAFT_06422 - hypothetical protein, at 23,769 to 24,071 _06422 H281DRAFT_06423: H281DRAFT_06423 - hypothetical protein, at 24,138 to 24,344 _06423 H281DRAFT_06424: H281DRAFT_06424 - transcriptional regulator, LysR family, at 24,399 to 25,376 _06424 H281DRAFT_06425: H281DRAFT_06425 - Predicted membrane protein, at 26,106 to 26,495 _06425 Position (kb) 24 25 26Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 23.598 kb on + strandat 23.654 kb on + strandat 23.655 kb on - strandat 23.655 kb on - strandat 23.660 kb on + strandat 23.660 kb on + strandat 23.660 kb on + strandat 23.660 kb on + strandat 23.660 kb on + strandat 23.661 kb on - strandat 23.672 kb on + strandat 23.673 kb on - strandat 23.718 kb on - strandat 23.847 kb on - strand, within H281DRAFT_06422at 23.861 kb on - strand, within H281DRAFT_06422at 24.233 kb on + strand, within H281DRAFT_06423at 24.342 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.606 kb on + strand, within H281DRAFT_06424at 24.694 kb on + strand, within H281DRAFT_06424at 24.698 kb on + strand, within H281DRAFT_06424at 24.699 kb on - strand, within H281DRAFT_06424at 24.750 kb on + strand, within H281DRAFT_06424at 24.751 kb on - strand, within H281DRAFT_06424at 24.751 kb on - strand, within H281DRAFT_06424at 24.751 kb on - strand, within H281DRAFT_06424at 24.822 kb on + strand, within H281DRAFT_06424at 25.062 kb on - strand, within H281DRAFT_06424at 25.062 kb on - strand, within H281DRAFT_06424at 25.250 kb on - strand, within H281DRAFT_06424at 25.250 kb on - strand, within H281DRAFT_06424at 25.323 kb on - strandat 25.323 kb on - strandat 25.463 kb on + strandat 25.510 kb on - strandat 25.535 kb on - strandat 25.607 kb on - strandat 25.607 kb on - strandat 25.607 kb on - strandat 25.646 kb on - strandat 25.715 kb on - strandat 25.715 kb on - strandat 25.775 kb on - strandat 25.906 kb on + strandat 25.906 kb on + strandat 25.936 kb on - strandat 25.987 kb on - strandat 26.070 kb on + strandat 26.071 kb on - strandat 26.116 kb on - strandat 26.116 kb on - strandat 26.116 kb on - strandat 26.144 kb on + strandat 26.299 kb on + strand, within H281DRAFT_06425

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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23,598 + +0.4
23,654 + +0.1
23,655 - -0.9
23,655 - -0.0
23,660 + -0.5
23,660 + -1.3
23,660 + -0.2
23,660 + +0.9
23,660 + +1.6
23,661 - +0.1
23,672 + +0.3
23,673 - +0.9
23,718 - +0.2
23,847 - H281DRAFT_06422 0.26 +0.3
23,861 - H281DRAFT_06422 0.30 +1.5
24,233 + H281DRAFT_06423 0.46 +0.7
24,342 + +1.0
24,400 + +0.9
24,400 + -0.9
24,401 - +0.1
24,401 - -0.0
24,606 + H281DRAFT_06424 0.21 +0.5
24,694 + H281DRAFT_06424 0.30 +0.2
24,698 + H281DRAFT_06424 0.31 -0.2
24,699 - H281DRAFT_06424 0.31 +0.1
24,750 + H281DRAFT_06424 0.36 -0.2
24,751 - H281DRAFT_06424 0.36 -3.6
24,751 - H281DRAFT_06424 0.36 +1.3
24,751 - H281DRAFT_06424 0.36 +0.4
24,822 + H281DRAFT_06424 0.43 +0.8
25,062 - H281DRAFT_06424 0.68 -4.6
25,062 - H281DRAFT_06424 0.68 +0.2
25,250 - H281DRAFT_06424 0.87 +1.4
25,250 - H281DRAFT_06424 0.87 -0.5
25,323 - -0.4
25,323 - +1.3
25,463 + +1.0
25,510 - -0.2
25,535 - +0.5
25,607 - +0.3
25,607 - -0.1
25,607 - +1.4
25,646 - -0.9
25,715 - -0.6
25,715 - +0.4
25,775 - +0.3
25,906 + +1.4
25,906 + +1.4
25,936 - -0.2
25,987 - +0.2
26,070 + +0.1
26,071 - +0.9
26,116 - +0.8
26,116 - -1.8
26,116 - -0.0
26,144 + +0.2
26,299 + H281DRAFT_06425 0.49 +1.8

Or see this region's nucleotide sequence