Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06175

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06174 and H281DRAFT_06175 are separated by 374 nucleotidesH281DRAFT_06175 and H281DRAFT_06176 are separated by 210 nucleotides H281DRAFT_06174: H281DRAFT_06174 - hypothetical protein, at 64,477 to 65,937 _06174 H281DRAFT_06175: H281DRAFT_06175 - DNA repair exonuclease, at 66,312 to 66,905 _06175 H281DRAFT_06176: H281DRAFT_06176 - exonuclease SbcC, at 67,116 to 69,437 _06176 Position (kb) 66 67Strain fitness (log2 ratio) -2 -1 0 1 2at 65.552 kb on + strand, within H281DRAFT_06174at 65.553 kb on - strand, within H281DRAFT_06174at 65.640 kb on + strand, within H281DRAFT_06174at 66.529 kb on + strand, within H281DRAFT_06175at 66.542 kb on + strand, within H281DRAFT_06175at 67.043 kb on - strandat 67.330 kb on - strandat 67.344 kb on + strandat 67.623 kb on + strand, within H281DRAFT_06176at 67.624 kb on - strand, within H281DRAFT_06176

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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65,552 + H281DRAFT_06174 0.74 -0.5
65,553 - H281DRAFT_06174 0.74 -2.7
65,640 + H281DRAFT_06174 0.80 +0.5
66,529 + H281DRAFT_06175 0.37 +2.0
66,542 + H281DRAFT_06175 0.39 +0.3
67,043 - -1.0
67,330 - +0.5
67,344 + -2.3
67,623 + H281DRAFT_06176 0.22 +0.4
67,624 - H281DRAFT_06176 0.22 +0.8

Or see this region's nucleotide sequence