Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06001

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05999 and H281DRAFT_06000 are separated by 87 nucleotidesH281DRAFT_06000 and H281DRAFT_06001 are separated by 95 nucleotidesH281DRAFT_06001 and H281DRAFT_06002 overlap by 4 nucleotides H281DRAFT_05999: H281DRAFT_05999 - hypothetical protein, at 1,223 to 1,927 _05999 H281DRAFT_06000: H281DRAFT_06000 - transcriptional regulator, AraC family, at 2,015 to 2,806 _06000 H281DRAFT_06001: H281DRAFT_06001 - hypothetical protein, at 2,902 to 3,186 _06001 H281DRAFT_06002: H281DRAFT_06002 - NADPH:quinone reductase, at 3,183 to 4,136 _06002 Position (kb) 2 3 4Strain fitness (log2 ratio) -2 -1 0 1at 1.974 kb on - strandat 2.047 kb on - strandat 2.110 kb on - strand, within H281DRAFT_06000at 2.114 kb on + strand, within H281DRAFT_06000at 2.836 kb on + strandat 2.837 kb on - strandat 2.878 kb on + strandat 3.330 kb on + strand, within H281DRAFT_06002at 3.586 kb on + strand, within H281DRAFT_06002at 3.974 kb on - strand, within H281DRAFT_06002at 4.081 kb on + strandat 4.127 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,974 - +0.5
2,047 - +0.1
2,110 - H281DRAFT_06000 0.12 -0.4
2,114 + H281DRAFT_06000 0.12 -1.9
2,836 + +0.9
2,837 - +1.4
2,878 + -0.3
3,330 + H281DRAFT_06002 0.15 -0.5
3,586 + H281DRAFT_06002 0.42 +0.3
3,974 - H281DRAFT_06002 0.83 -0.6
4,081 + +0.1
4,127 + +1.4

Or see this region's nucleotide sequence