Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05888

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05887 and H281DRAFT_05888 overlap by 8 nucleotidesH281DRAFT_05888 and H281DRAFT_05889 are separated by 4 nucleotidesH281DRAFT_05889 and H281DRAFT_05890 overlap by 4 nucleotides H281DRAFT_05887: H281DRAFT_05887 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 25,085 to 26,122 _05887 H281DRAFT_05888: H281DRAFT_05888 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 26,115 to 27,218 _05888 H281DRAFT_05889: H281DRAFT_05889 - hypothetical protein, at 27,223 to 27,417 _05889 H281DRAFT_05890: H281DRAFT_05890 - carbohydrate ABC transporter membrane protein 2, CUT1 family, at 27,414 to 28,367 _05890 Position (kb) 26 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 25.119 kb on + strandat 25.552 kb on - strand, within H281DRAFT_05887at 25.885 kb on + strand, within H281DRAFT_05887at 26.060 kb on - strandat 26.679 kb on - strand, within H281DRAFT_05888at 26.939 kb on + strand, within H281DRAFT_05888at 26.952 kb on - strand, within H281DRAFT_05888at 27.058 kb on - strand, within H281DRAFT_05888at 27.720 kb on + strand, within H281DRAFT_05890at 27.829 kb on + strand, within H281DRAFT_05890at 27.964 kb on + strand, within H281DRAFT_05890at 27.988 kb on - strand, within H281DRAFT_05890at 28.172 kb on - strand, within H281DRAFT_05890

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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25,119 + +0.3
25,552 - H281DRAFT_05887 0.45 -0.7
25,885 + H281DRAFT_05887 0.77 -0.0
26,060 - -0.3
26,679 - H281DRAFT_05888 0.51 +1.2
26,939 + H281DRAFT_05888 0.75 +2.0
26,952 - H281DRAFT_05888 0.76 +1.3
27,058 - H281DRAFT_05888 0.85 +0.6
27,720 + H281DRAFT_05890 0.32 +0.7
27,829 + H281DRAFT_05890 0.44 -3.1
27,964 + H281DRAFT_05890 0.58 +1.1
27,988 - H281DRAFT_05890 0.60 +0.4
28,172 - H281DRAFT_05890 0.79 -0.3

Or see this region's nucleotide sequence