Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05885

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05883 and H281DRAFT_05884 are separated by 121 nucleotidesH281DRAFT_05884 and H281DRAFT_05885 are separated by 40 nucleotidesH281DRAFT_05885 and H281DRAFT_05886 are separated by 2 nucleotidesH281DRAFT_05886 and H281DRAFT_05887 overlap by 4 nucleotides H281DRAFT_05883: H281DRAFT_05883 - ornithine cyclodeaminase (EC 4.3.1.12), at 21,677 to 22,648 _05883 H281DRAFT_05884: H281DRAFT_05884 - Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains, at 22,770 to 23,414 _05884 H281DRAFT_05885: H281DRAFT_05885 - dihydroxyacetone kinase DhaK subunit, at 23,455 to 24,444 _05885 H281DRAFT_05886: H281DRAFT_05886 - dihydroxyacetone kinase DhaL subunit, at 24,447 to 25,088 _05886 H281DRAFT_05887: H281DRAFT_05887 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 25,085 to 26,122 _05887 Position (kb) 23 24 25Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 22.646 kb on + strandat 22.647 kb on - strandat 22.905 kb on + strand, within H281DRAFT_05884at 23.075 kb on - strand, within H281DRAFT_05884at 23.094 kb on + strand, within H281DRAFT_05884at 23.095 kb on - strandat 23.131 kb on + strand, within H281DRAFT_05884at 23.162 kb on + strand, within H281DRAFT_05884at 23.163 kb on - strand, within H281DRAFT_05884at 23.179 kb on + strand, within H281DRAFT_05884at 23.337 kb on + strand, within H281DRAFT_05884at 23.337 kb on + strand, within H281DRAFT_05884at 23.728 kb on + strand, within H281DRAFT_05885at 23.905 kb on - strand, within H281DRAFT_05885at 24.026 kb on + strand, within H281DRAFT_05885at 25.048 kb on + strandat 25.119 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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22,646 + -0.3
22,647 - -0.1
22,905 + H281DRAFT_05884 0.21 -0.6
23,075 - H281DRAFT_05884 0.47 -0.3
23,094 + H281DRAFT_05884 0.50 -1.3
23,095 - +0.2
23,131 + H281DRAFT_05884 0.56 -4.4
23,162 + H281DRAFT_05884 0.61 -0.1
23,163 - H281DRAFT_05884 0.61 -0.2
23,179 + H281DRAFT_05884 0.63 -1.0
23,337 + H281DRAFT_05884 0.88 -0.3
23,337 + H281DRAFT_05884 0.88 +1.3
23,728 + H281DRAFT_05885 0.28 +1.8
23,905 - H281DRAFT_05885 0.45 +0.6
24,026 + H281DRAFT_05885 0.58 -0.1
25,048 + -0.2
25,119 + +0.3

Or see this region's nucleotide sequence