Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05285 and H281DRAFT_05286 are separated by 102 nucleotides H281DRAFT_05286 and H281DRAFT_05287 are separated by 45 nucleotides
H281DRAFT_05285: H281DRAFT_05285 - Threonine/homoserine efflux transporter RhtA, at 27,592 to 28,524
_05285
H281DRAFT_05286: H281DRAFT_05286 - transcriptional regulator, LysR family, at 28,627 to 29,514
_05286
H281DRAFT_05287: H281DRAFT_05287 - porin, OprB family, at 29,560 to 31,119
_05287
Position (kb) 28
29
30 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 27.637 kb on + strand at 27.827 kb on + strand, within H281DRAFT_05285 at 27.827 kb on + strand, within H281DRAFT_05285 at 27.828 kb on - strand, within H281DRAFT_05285 at 27.828 kb on - strand, within H281DRAFT_05285 at 27.828 kb on - strand at 27.912 kb on + strand, within H281DRAFT_05285 at 28.064 kb on + strand, within H281DRAFT_05285 at 28.071 kb on + strand, within H281DRAFT_05285 at 28.825 kb on - strand at 29.182 kb on + strand, within H281DRAFT_05286 at 29.211 kb on + strand, within H281DRAFT_05286 at 29.657 kb on + strand at 29.699 kb on + strand at 29.706 kb on - strand at 29.744 kb on + strand, within H281DRAFT_05287 at 30.075 kb on - strand, within H281DRAFT_05287 at 30.104 kb on + strand, within H281DRAFT_05287 at 30.122 kb on + strand, within H281DRAFT_05287 at 30.122 kb on + strand, within H281DRAFT_05287 at 30.123 kb on - strand, within H281DRAFT_05287 at 30.198 kb on - strand, within H281DRAFT_05287 at 30.389 kb on + strand, within H281DRAFT_05287
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 27,637 + +0.5 27,827 + H281DRAFT_05285 0.25 -1.2 27,827 + H281DRAFT_05285 0.25 +0.7 27,828 - H281DRAFT_05285 0.25 +0.3 27,828 - H281DRAFT_05285 0.25 -4.1 27,828 - +0.4 27,912 + H281DRAFT_05285 0.34 -0.2 28,064 + H281DRAFT_05285 0.51 +1.1 28,071 + H281DRAFT_05285 0.51 -0.2 28,825 - -2.2 29,182 + H281DRAFT_05286 0.62 +0.7 29,211 + H281DRAFT_05286 0.66 +2.0 29,657 + +0.3 29,699 + +0.8 29,706 - +0.6 29,744 + H281DRAFT_05287 0.12 +1.1 30,075 - H281DRAFT_05287 0.33 +0.2 30,104 + H281DRAFT_05287 0.35 +0.5 30,122 + H281DRAFT_05287 0.36 +0.1 30,122 + H281DRAFT_05287 0.36 -0.1 30,123 - H281DRAFT_05287 0.36 +0.4 30,198 - H281DRAFT_05287 0.41 -1.8 30,389 + H281DRAFT_05287 0.53 -4.0
Or see this region's nucleotide sequence