Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05267

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05265 and H281DRAFT_05266 are separated by 400 nucleotidesH281DRAFT_05266 and H281DRAFT_05267 are separated by 11 nucleotidesH281DRAFT_05267 and H281DRAFT_05268 are separated by 171 nucleotides H281DRAFT_05265: H281DRAFT_05265 - hypothetical protein, at 7,029 to 8,192 _05265 H281DRAFT_05266: H281DRAFT_05266 - hypothetical protein, at 8,593 to 8,931 _05266 H281DRAFT_05267: H281DRAFT_05267 - 3-hydroxypropanoate dehydrogenase, at 8,943 to 9,527 _05267 H281DRAFT_05268: H281DRAFT_05268 - Alkylated DNA repair dioxygenase AlkB, at 9,699 to 10,313 _05268 Position (kb) 8 9 10Strain fitness (log2 ratio) -3 -2 -1 0 1at 8.101 kb on - strandat 8.170 kb on - strandat 8.192 kb on + strandat 8.193 kb on - strandat 8.284 kb on - strandat 8.484 kb on - strandat 8.723 kb on - strand, within H281DRAFT_05266at 8.911 kb on + strandat 8.912 kb on - strandat 9.143 kb on - strand, within H281DRAFT_05267at 9.154 kb on - strand, within H281DRAFT_05267at 9.154 kb on - strand, within H281DRAFT_05267at 9.476 kb on - strandat 9.476 kb on - strandat 9.531 kb on - strandat 9.583 kb on - strandat 9.648 kb on + strandat 9.649 kb on - strandat 9.651 kb on + strandat 9.652 kb on - strandat 9.699 kb on - strandat 9.699 kb on - strandat 9.710 kb on - strandat 9.821 kb on + strand, within H281DRAFT_05268at 9.821 kb on + strand, within H281DRAFT_05268at 9.831 kb on - strand, within H281DRAFT_05268at 9.894 kb on + strand, within H281DRAFT_05268at 9.894 kb on + strand, within H281DRAFT_05268at 9.894 kb on + strand, within H281DRAFT_05268at 9.894 kb on + strand, within H281DRAFT_05268at 9.901 kb on - strand, within H281DRAFT_05268at 9.952 kb on + strand, within H281DRAFT_05268at 9.953 kb on - strand, within H281DRAFT_05268at 10.032 kb on - strandat 10.127 kb on + strand, within H281DRAFT_05268at 10.128 kb on - strand, within H281DRAFT_05268at 10.128 kb on - strand, within H281DRAFT_05268at 10.215 kb on - strand, within H281DRAFT_05268at 10.259 kb on + strandat 10.260 kb on - strandat 10.371 kb on + strandat 10.371 kb on + strandat 10.372 kb on - strandat 10.460 kb on + strandat 10.461 kb on - strandat 10.473 kb on + strandat 10.474 kb on - strandat 10.505 kb on + strandat 10.505 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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8,101 - +0.9
8,170 - +0.1
8,192 + -0.8
8,193 - -3.5
8,284 - +0.3
8,484 - +0.4
8,723 - H281DRAFT_05266 0.38 +0.2
8,911 + +0.6
8,912 - -0.3
9,143 - H281DRAFT_05267 0.34 -1.4
9,154 - H281DRAFT_05267 0.36 +0.4
9,154 - H281DRAFT_05267 0.36 -1.2
9,476 - +0.8
9,476 - +0.1
9,531 - +1.1
9,583 - +1.4
9,648 + +0.0
9,649 - +0.0
9,651 + -1.7
9,652 - +0.2
9,699 - -1.3
9,699 - -0.6
9,710 - -2.3
9,821 + H281DRAFT_05268 0.20 -0.3
9,821 + H281DRAFT_05268 0.20 +0.1
9,831 - H281DRAFT_05268 0.21 +0.7
9,894 + H281DRAFT_05268 0.32 +1.3
9,894 + H281DRAFT_05268 0.32 +0.1
9,894 + H281DRAFT_05268 0.32 -0.9
9,894 + H281DRAFT_05268 0.32 +0.7
9,901 - H281DRAFT_05268 0.33 -0.0
9,952 + H281DRAFT_05268 0.41 +0.1
9,953 - H281DRAFT_05268 0.41 +0.6
10,032 - -2.6
10,127 + H281DRAFT_05268 0.70 -0.0
10,128 - H281DRAFT_05268 0.70 -0.4
10,128 - H281DRAFT_05268 0.70 -0.5
10,215 - H281DRAFT_05268 0.84 +0.4
10,259 + +0.9
10,260 - +1.4
10,371 + -2.6
10,371 + +1.2
10,372 - +0.6
10,460 + +1.6
10,461 - -1.1
10,473 + +0.3
10,474 - +0.3
10,505 + -2.7
10,505 + +0.4

Or see this region's nucleotide sequence