Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04945 and H281DRAFT_04946 are separated by 32 nucleotides H281DRAFT_04946 and H281DRAFT_04947 are separated by 1 nucleotides
H281DRAFT_04945: H281DRAFT_04945 - Phenylpropionate dioxygenase, large terminal subunit, at 129,097 to 130,260
_04945
H281DRAFT_04946: H281DRAFT_04946 - putative spermidine/putrescine transport system ATP-binding protein, at 130,293 to 131,474
_04946
H281DRAFT_04947: H281DRAFT_04947 - putative spermidine/putrescine transport system substrate-binding protein, at 131,476 to 132,522
_04947
Position (kb) 130
131
132 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 129.575 kb on - strand, within H281DRAFT_04945 at 129.651 kb on + strand, within H281DRAFT_04945 at 129.652 kb on - strand, within H281DRAFT_04945 at 129.677 kb on - strand, within H281DRAFT_04945 at 129.931 kb on + strand, within H281DRAFT_04945 at 129.965 kb on - strand, within H281DRAFT_04945 at 129.973 kb on + strand, within H281DRAFT_04945 at 130.251 kb on + strand at 130.339 kb on - strand at 131.206 kb on + strand, within H281DRAFT_04946 at 131.235 kb on + strand, within H281DRAFT_04946 at 131.258 kb on - strand, within H281DRAFT_04946 at 131.875 kb on + strand, within H281DRAFT_04947 at 131.875 kb on + strand at 132.167 kb on - strand, within H281DRAFT_04947 at 132.329 kb on - strand, within H281DRAFT_04947 at 132.346 kb on + strand, within H281DRAFT_04947
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 129,575 - H281DRAFT_04945 0.41 -0.5 129,651 + H281DRAFT_04945 0.48 -2.0 129,652 - H281DRAFT_04945 0.48 -0.2 129,677 - H281DRAFT_04945 0.50 +0.7 129,931 + H281DRAFT_04945 0.72 +0.4 129,965 - H281DRAFT_04945 0.75 -0.0 129,973 + H281DRAFT_04945 0.75 +3.2 130,251 + +0.4 130,339 - +0.2 131,206 + H281DRAFT_04946 0.77 +1.4 131,235 + H281DRAFT_04946 0.80 +0.9 131,258 - H281DRAFT_04946 0.82 +0.7 131,875 + H281DRAFT_04947 0.38 +2.0 131,875 + +0.6 132,167 - H281DRAFT_04947 0.66 -0.9 132,329 - H281DRAFT_04947 0.81 -0.1 132,346 + H281DRAFT_04947 0.83 -1.4
Or see this region's nucleotide sequence