Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04402 and H281DRAFT_04403 are separated by 96 nucleotides H281DRAFT_04403 and H281DRAFT_04404 are separated by 230 nucleotides H281DRAFT_04404 and H281DRAFT_04405 are separated by 11 nucleotides
H281DRAFT_04402: H281DRAFT_04402 - carbamoyl-phosphate synthase small subunit, at 118,195 to 119,349
_04402
H281DRAFT_04403: H281DRAFT_04403 - carbamoyl-phosphate synthase large subunit, at 119,446 to 122,700
_04403
H281DRAFT_04404: H281DRAFT_04404 - GreA/GreB family elongation factor, at 122,931 to 123,407
_04404
H281DRAFT_04405: H281DRAFT_04405 - protein of unknown function (DUF4149), at 123,419 to 123,937
_04405
Position (kb)
119
120
121
122
123 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 119.376 kb on + strand at 119.428 kb on + strand at 119.428 kb on + strand at 119.428 kb on + strand at 119.429 kb on - strand at 122.672 kb on + strand at 122.673 kb on - strand at 122.725 kb on + strand at 122.725 kb on + strand at 122.726 kb on - strand at 122.726 kb on - strand at 122.726 kb on - strand at 122.726 kb on - strand at 122.726 kb on - strand at 122.804 kb on + strand at 122.930 kb on + strand at 122.939 kb on + strand at 122.940 kb on - strand at 122.940 kb on - strand at 123.072 kb on + strand, within H281DRAFT_04404 at 123.072 kb on + strand, within H281DRAFT_04404 at 123.072 kb on + strand, within H281DRAFT_04404 at 123.378 kb on + strand at 123.379 kb on - strand at 123.395 kb on + strand at 123.396 kb on - strand at 123.396 kb on - strand at 123.396 kb on - strand at 123.399 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 119,376 + -0.4 119,428 + +0.5 119,428 + +0.2 119,428 + +0.8 119,429 - -1.5 122,672 + +0.4 122,673 - +1.3 122,725 + +0.1 122,725 + -0.9 122,726 - -1.6 122,726 - -1.5 122,726 - -2.5 122,726 - -1.1 122,726 - -3.2 122,804 + -1.5 122,930 + -0.4 122,939 + -0.2 122,940 - +0.8 122,940 - -0.5 123,072 + H281DRAFT_04404 0.30 +0.8 123,072 + H281DRAFT_04404 0.30 -0.8 123,072 + H281DRAFT_04404 0.30 -0.3 123,378 + +0.0 123,379 - -0.7 123,395 + +0.6 123,396 - +1.0 123,396 - +1.1 123,396 - -0.8 123,399 + -0.9
Or see this region's nucleotide sequence