Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04193 and H281DRAFT_04194 are separated by 90 nucleotides H281DRAFT_04194 and H281DRAFT_04195 are separated by 329 nucleotides H281DRAFT_04195 and H281DRAFT_04196 are separated by 180 nucleotides H281DRAFT_04196 and H281DRAFT_04197 overlap by 23 nucleotides
H281DRAFT_04193: H281DRAFT_04193 - branched chain amino acid aminotransferase apoenzyme, at 312,760 to 313,683
_04193
H281DRAFT_04194: H281DRAFT_04194 - Uncharacterized conserved protein, contains Zn-finger domain, at 313,774 to 313,968
_04194
H281DRAFT_04195: H281DRAFT_04195 - heptosyltransferase-2, at 314,298 to 315,323
_04195
H281DRAFT_04196: H281DRAFT_04196 - SnoaL-like domain-containing protein, at 315,504 to 315,950
_04196
H281DRAFT_04197: H281DRAFT_04197 - hypothetical protein, at 315,928 to 317,103
_04197
Position (kb) 314
315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 313.300 kb on + strand, within H281DRAFT_04193 at 313.333 kb on + strand, within H281DRAFT_04193 at 313.333 kb on + strand, within H281DRAFT_04193 at 313.387 kb on + strand at 313.501 kb on + strand, within H281DRAFT_04193 at 313.501 kb on + strand, within H281DRAFT_04193 at 313.501 kb on + strand, within H281DRAFT_04193 at 313.501 kb on + strand, within H281DRAFT_04193 at 313.501 kb on + strand, within H281DRAFT_04193 at 313.501 kb on + strand, within H281DRAFT_04193 at 313.501 kb on + strand, within H281DRAFT_04193 at 313.501 kb on + strand, within H281DRAFT_04193 at 313.503 kb on + strand, within H281DRAFT_04193 at 313.657 kb on + strand at 313.657 kb on + strand at 313.681 kb on + strand at 313.682 kb on - strand at 313.757 kb on + strand at 313.758 kb on - strand at 313.930 kb on + strand, within H281DRAFT_04194 at 314.001 kb on + strand at 314.002 kb on - strand at 314.002 kb on - strand at 314.187 kb on + strand at 314.187 kb on + strand at 314.233 kb on + strand at 314.721 kb on + strand, within H281DRAFT_04195 at 314.721 kb on + strand, within H281DRAFT_04195 at 314.722 kb on - strand, within H281DRAFT_04195 at 314.860 kb on - strand, within H281DRAFT_04195 at 315.339 kb on + strand at 315.339 kb on + strand at 315.339 kb on + strand at 315.522 kb on - strand at 315.558 kb on + strand, within H281DRAFT_04196 at 315.559 kb on - strand, within H281DRAFT_04196 at 315.581 kb on + strand, within H281DRAFT_04196 at 315.582 kb on - strand, within H281DRAFT_04196 at 315.828 kb on + strand, within H281DRAFT_04196 at 315.828 kb on + strand, within H281DRAFT_04196 at 315.828 kb on + strand, within H281DRAFT_04196 at 315.829 kb on - strand, within H281DRAFT_04196 at 315.829 kb on - strand, within H281DRAFT_04196 at 315.829 kb on - strand, within H281DRAFT_04196 at 316.140 kb on + strand, within H281DRAFT_04197 at 316.200 kb on + strand, within H281DRAFT_04197
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 313,300 + H281DRAFT_04193 0.58 +0.1 313,333 + H281DRAFT_04193 0.62 +0.1 313,333 + H281DRAFT_04193 0.62 -0.9 313,387 + +3.1 313,501 + H281DRAFT_04193 0.80 +0.4 313,501 + H281DRAFT_04193 0.80 +0.2 313,501 + H281DRAFT_04193 0.80 +0.8 313,501 + H281DRAFT_04193 0.80 -0.0 313,501 + H281DRAFT_04193 0.80 -0.6 313,501 + H281DRAFT_04193 0.80 -0.1 313,501 + H281DRAFT_04193 0.80 -0.4 313,501 + H281DRAFT_04193 0.80 +0.5 313,503 + H281DRAFT_04193 0.80 -0.4 313,657 + +0.5 313,657 + -0.8 313,681 + -0.2 313,682 - -1.5 313,757 + -1.1 313,758 - -1.8 313,930 + H281DRAFT_04194 0.80 +1.5 314,001 + -0.6 314,002 - +2.2 314,002 - -1.2 314,187 + -0.5 314,187 + -0.7 314,233 + -0.4 314,721 + H281DRAFT_04195 0.41 +0.9 314,721 + H281DRAFT_04195 0.41 -3.3 314,722 - H281DRAFT_04195 0.41 -2.3 314,860 - H281DRAFT_04195 0.55 -2.6 315,339 + +0.6 315,339 + +1.5 315,339 + +0.4 315,522 - -0.2 315,558 + H281DRAFT_04196 0.12 +0.3 315,559 - H281DRAFT_04196 0.12 -0.5 315,581 + H281DRAFT_04196 0.17 -1.7 315,582 - H281DRAFT_04196 0.17 -0.3 315,828 + H281DRAFT_04196 0.72 -1.2 315,828 + H281DRAFT_04196 0.72 -1.3 315,828 + H281DRAFT_04196 0.72 -0.1 315,829 - H281DRAFT_04196 0.73 -0.4 315,829 - H281DRAFT_04196 0.73 -1.3 315,829 - H281DRAFT_04196 0.73 -1.6 316,140 + H281DRAFT_04197 0.18 +0.8 316,200 + H281DRAFT_04197 0.23 -0.5
Or see this region's nucleotide sequence