Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03906

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03904 and H281DRAFT_03905 are separated by 14 nucleotidesH281DRAFT_03905 and H281DRAFT_03906 overlap by 11 nucleotidesH281DRAFT_03906 and H281DRAFT_03907 are separated by 241 nucleotides H281DRAFT_03904: H281DRAFT_03904 - D-methionine transport system substrate-binding protein, at 891 to 1,688 _03904 H281DRAFT_03905: H281DRAFT_03905 - D-methionine transport system permease protein, at 1,703 to 2,356 _03905 H281DRAFT_03906: H281DRAFT_03906 - D-methionine transport system ATP-binding protein, at 2,346 to 3,380 _03906 H281DRAFT_03907: H281DRAFT_03907 - Lysophospholipase, alpha-beta hydrolase superfamily, at 3,622 to 4,575 _03907 Position (kb) 2 3 4Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1.351 kb on + strand, within H281DRAFT_03904at 1.352 kb on - strand, within H281DRAFT_03904at 1.352 kb on - strand, within H281DRAFT_03904at 1.352 kb on - strand, within H281DRAFT_03904at 1.429 kb on + strand, within H281DRAFT_03904at 1.429 kb on + strand, within H281DRAFT_03904at 1.445 kb on - strand, within H281DRAFT_03904at 1.445 kb on - strand, within H281DRAFT_03904at 1.642 kb on - strandat 1.705 kb on - strandat 1.708 kb on + strandat 1.709 kb on - strandat 1.709 kb on - strandat 1.878 kb on + strand, within H281DRAFT_03905at 1.956 kb on - strand, within H281DRAFT_03905at 1.956 kb on - strand, within H281DRAFT_03905at 1.956 kb on - strand, within H281DRAFT_03905at 2.162 kb on - strand, within H281DRAFT_03905at 2.241 kb on + strand, within H281DRAFT_03905at 2.242 kb on - strand, within H281DRAFT_03905at 2.336 kb on - strandat 2.336 kb on - strandat 2.356 kb on + strandat 2.356 kb on + strandat 2.357 kb on - strandat 2.357 kb on - strandat 2.357 kb on - strandat 2.357 kb on - strandat 2.395 kb on + strandat 2.395 kb on + strandat 2.395 kb on + strandat 2.395 kb on + strandat 2.395 kb on + strandat 2.512 kb on + strand, within H281DRAFT_03906at 3.082 kb on + strand, within H281DRAFT_03906at 3.082 kb on + strand, within H281DRAFT_03906at 3.369 kb on + strandat 3.369 kb on + strandat 3.370 kb on - strandat 3.450 kb on + strandat 3.475 kb on - strandat 3.479 kb on + strandat 3.479 kb on + strandat 3.527 kb on - strandat 3.731 kb on - strand, within H281DRAFT_03907at 3.746 kb on + strand, within H281DRAFT_03907at 3.747 kb on - strand, within H281DRAFT_03907at 3.747 kb on - strand, within H281DRAFT_03907at 3.747 kb on - strand, within H281DRAFT_03907at 3.747 kb on - strand, within H281DRAFT_03907at 3.747 kb on - strand, within H281DRAFT_03907at 3.898 kb on + strand, within H281DRAFT_03907at 3.898 kb on + strand, within H281DRAFT_03907at 3.898 kb on + strand, within H281DRAFT_03907at 3.898 kb on + strand, within H281DRAFT_03907at 3.898 kb on + strand, within H281DRAFT_03907at 3.899 kb on - strand, within H281DRAFT_03907at 3.899 kb on - strand, within H281DRAFT_03907at 3.919 kb on + strand, within H281DRAFT_03907at 3.919 kb on + strand, within H281DRAFT_03907at 3.941 kb on + strand, within H281DRAFT_03907at 3.996 kb on + strand, within H281DRAFT_03907at 3.996 kb on + strandat 3.996 kb on + strand, within H281DRAFT_03907at 4.024 kb on + strand, within H281DRAFT_03907at 4.025 kb on - strand, within H281DRAFT_03907

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,351 + H281DRAFT_03904 0.58 -0.1
1,352 - H281DRAFT_03904 0.58 -0.9
1,352 - H281DRAFT_03904 0.58 -1.0
1,352 - H281DRAFT_03904 0.58 -3.2
1,429 + H281DRAFT_03904 0.67 +0.8
1,429 + H281DRAFT_03904 0.67 +0.4
1,445 - H281DRAFT_03904 0.69 +0.4
1,445 - H281DRAFT_03904 0.69 +0.6
1,642 - +1.4
1,705 - -1.1
1,708 + +0.6
1,709 - +0.0
1,709 - -0.0
1,878 + H281DRAFT_03905 0.27 +1.9
1,956 - H281DRAFT_03905 0.39 -0.1
1,956 - H281DRAFT_03905 0.39 -0.4
1,956 - H281DRAFT_03905 0.39 +0.4
2,162 - H281DRAFT_03905 0.70 +1.6
2,241 + H281DRAFT_03905 0.82 +1.2
2,242 - H281DRAFT_03905 0.82 +0.4
2,336 - +2.0
2,336 - -1.2
2,356 + +0.1
2,356 + +0.8
2,357 - +0.5
2,357 - -1.2
2,357 - +0.0
2,357 - +0.1
2,395 + +0.1
2,395 + -0.4
2,395 + -0.2
2,395 + -0.1
2,395 + +0.6
2,512 + H281DRAFT_03906 0.16 -0.4
3,082 + H281DRAFT_03906 0.71 +0.6
3,082 + H281DRAFT_03906 0.71 -0.2
3,369 + +0.2
3,369 + +1.0
3,370 - -1.1
3,450 + +0.9
3,475 - -0.3
3,479 + -1.3
3,479 + -0.6
3,527 - -0.1
3,731 - H281DRAFT_03907 0.11 +0.0
3,746 + H281DRAFT_03907 0.13 -0.9
3,747 - H281DRAFT_03907 0.13 +0.2
3,747 - H281DRAFT_03907 0.13 +0.3
3,747 - H281DRAFT_03907 0.13 +0.5
3,747 - H281DRAFT_03907 0.13 +0.1
3,747 - H281DRAFT_03907 0.13 -4.6
3,898 + H281DRAFT_03907 0.29 -1.5
3,898 + H281DRAFT_03907 0.29 -0.6
3,898 + H281DRAFT_03907 0.29 -0.2
3,898 + H281DRAFT_03907 0.29 -0.1
3,898 + H281DRAFT_03907 0.29 +0.1
3,899 - H281DRAFT_03907 0.29 +0.2
3,899 - H281DRAFT_03907 0.29 -0.3
3,919 + H281DRAFT_03907 0.31 +0.4
3,919 + H281DRAFT_03907 0.31 +0.4
3,941 + H281DRAFT_03907 0.33 +1.0
3,996 + H281DRAFT_03907 0.39 +1.1
3,996 + -0.7
3,996 + H281DRAFT_03907 0.39 -0.2
4,024 + H281DRAFT_03907 0.42 +1.0
4,025 - H281DRAFT_03907 0.42 -1.5

Or see this region's nucleotide sequence