Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03861

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03860 and H281DRAFT_03861 are separated by 289 nucleotidesH281DRAFT_03861 and H281DRAFT_03862 are separated by 307 nucleotides H281DRAFT_03860: H281DRAFT_03860 - hypothetical protein, at 389,925 to 390,149 _03860 H281DRAFT_03861: H281DRAFT_03861 - cold-shock DNA-binding protein family, at 390,439 to 390,642 _03861 H281DRAFT_03862: H281DRAFT_03862 - Threonine/homoserine/homoserine lactone efflux protein, at 390,950 to 391,639 _03862 Position (kb) 390 391Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 389.553 kb on + strandat 389.554 kb on - strandat 389.669 kb on - strandat 389.692 kb on + strandat 389.692 kb on + strandat 389.692 kb on + strandat 389.753 kb on + strandat 389.753 kb on + strandat 389.753 kb on + strandat 389.753 kb on + strandat 389.754 kb on - strandat 389.754 kb on - strandat 389.754 kb on - strandat 389.777 kb on - strandat 389.829 kb on + strandat 389.829 kb on + strandat 389.830 kb on - strandat 389.830 kb on - strandat 389.830 kb on - strandat 389.836 kb on - strandat 389.916 kb on - strandat 390.020 kb on - strand, within H281DRAFT_03860at 390.077 kb on + strand, within H281DRAFT_03860at 390.078 kb on - strand, within H281DRAFT_03860at 390.125 kb on - strand, within H281DRAFT_03860at 390.153 kb on - strandat 390.159 kb on + strandat 390.261 kb on - strandat 390.440 kb on + strandat 390.440 kb on + strandat 390.441 kb on - strandat 390.441 kb on - strandat 390.441 kb on - strandat 390.624 kb on + strandat 390.624 kb on + strandat 390.625 kb on - strandat 390.826 kb on - strandat 391.047 kb on + strand, within H281DRAFT_03862at 391.048 kb on - strand, within H281DRAFT_03862at 391.048 kb on - strand, within H281DRAFT_03862at 391.096 kb on - strand, within H281DRAFT_03862at 391.096 kb on - strand, within H281DRAFT_03862at 391.140 kb on + strand, within H281DRAFT_03862at 391.140 kb on + strand, within H281DRAFT_03862at 391.183 kb on + strand, within H281DRAFT_03862at 391.194 kb on + strand, within H281DRAFT_03862at 391.195 kb on - strand, within H281DRAFT_03862at 391.228 kb on + strand, within H281DRAFT_03862at 391.229 kb on - strand, within H281DRAFT_03862at 391.330 kb on - strand, within H281DRAFT_03862at 391.338 kb on + strand, within H281DRAFT_03862at 391.339 kb on - strand, within H281DRAFT_03862at 391.339 kb on - strand, within H281DRAFT_03862at 391.368 kb on + strand, within H281DRAFT_03862at 391.369 kb on - strand, within H281DRAFT_03862at 391.396 kb on + strand, within H281DRAFT_03862at 391.396 kb on + strand, within H281DRAFT_03862at 391.396 kb on + strand, within H281DRAFT_03862at 391.396 kb on + strand, within H281DRAFT_03862at 391.397 kb on - strand, within H281DRAFT_03862at 391.397 kb on - strand, within H281DRAFT_03862at 391.397 kb on - strand, within H281DRAFT_03862at 391.399 kb on - strand, within H281DRAFT_03862at 391.400 kb on + strand, within H281DRAFT_03862at 391.401 kb on - strand, within H281DRAFT_03862at 391.424 kb on - strand, within H281DRAFT_03862at 391.539 kb on - strand, within H281DRAFT_03862at 391.609 kb on - strandat 391.609 kb on - strandat 391.634 kb on + strandat 391.634 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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389,553 + +0.4
389,554 - +0.5
389,669 - -2.2
389,692 + -0.4
389,692 + +0.4
389,692 + -0.0
389,753 + -1.7
389,753 + -2.2
389,753 + -0.4
389,753 + +2.5
389,754 - +0.9
389,754 - -0.4
389,754 - +0.9
389,777 - -0.4
389,829 + +0.3
389,829 + +2.1
389,830 - -0.2
389,830 - +0.6
389,830 - +0.5
389,836 - +0.2
389,916 - +0.8
390,020 - H281DRAFT_03860 0.42 +1.2
390,077 + H281DRAFT_03860 0.68 -3.6
390,078 - H281DRAFT_03860 0.68 +0.5
390,125 - H281DRAFT_03860 0.89 -0.1
390,153 - +0.0
390,159 + +0.1
390,261 - -2.9
390,440 + +0.0
390,440 + +0.1
390,441 - -2.8
390,441 - +0.1
390,441 - +1.1
390,624 + +0.1
390,624 + -3.1
390,625 - -0.5
390,826 - -1.1
391,047 + H281DRAFT_03862 0.14 -0.1
391,048 - H281DRAFT_03862 0.14 -0.1
391,048 - H281DRAFT_03862 0.14 -0.5
391,096 - H281DRAFT_03862 0.21 +0.0
391,096 - H281DRAFT_03862 0.21 -0.2
391,140 + H281DRAFT_03862 0.28 -0.5
391,140 + H281DRAFT_03862 0.28 -0.1
391,183 + H281DRAFT_03862 0.34 +0.0
391,194 + H281DRAFT_03862 0.35 +0.4
391,195 - H281DRAFT_03862 0.36 +0.3
391,228 + H281DRAFT_03862 0.40 +0.2
391,229 - H281DRAFT_03862 0.40 -0.5
391,330 - H281DRAFT_03862 0.55 +0.5
391,338 + H281DRAFT_03862 0.56 +0.0
391,339 - H281DRAFT_03862 0.56 -0.3
391,339 - H281DRAFT_03862 0.56 +1.3
391,368 + H281DRAFT_03862 0.61 +0.9
391,369 - H281DRAFT_03862 0.61 +0.2
391,396 + H281DRAFT_03862 0.65 -0.1
391,396 + H281DRAFT_03862 0.65 +1.2
391,396 + H281DRAFT_03862 0.65 +0.1
391,396 + H281DRAFT_03862 0.65 -0.1
391,397 - H281DRAFT_03862 0.65 +0.5
391,397 - H281DRAFT_03862 0.65 -3.1
391,397 - H281DRAFT_03862 0.65 -1.1
391,399 - H281DRAFT_03862 0.65 -3.9
391,400 + H281DRAFT_03862 0.65 -0.0
391,401 - H281DRAFT_03862 0.65 +0.3
391,424 - H281DRAFT_03862 0.69 -0.2
391,539 - H281DRAFT_03862 0.85 +0.4
391,609 - +0.5
391,609 - +0.1
391,634 + +2.3
391,634 + -1.7

Or see this region's nucleotide sequence