Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03413 and H281DRAFT_03414 are separated by 154 nucleotides H281DRAFT_03414 and H281DRAFT_03415 are separated by 121 nucleotides H281DRAFT_03415 and H281DRAFT_03416 are separated by 328 nucleotides
H281DRAFT_03413: H281DRAFT_03413 - high affinity sulphate transporter 1, at 483,288 to 485,081
_03413
H281DRAFT_03414: H281DRAFT_03414 - outer membrane surface antigen, at 485,236 to 485,766
_03414
H281DRAFT_03415: H281DRAFT_03415 - polyphosphate kinase 2, PA0141 family, at 485,888 to 486,703
_03415
H281DRAFT_03416: H281DRAFT_03416 - filamentous hemagglutinin family N-terminal domain-containing protein, at 487,032 to 489,509
_03416
Position (kb) 485
486
487 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 484.988 kb on - strand at 485.189 kb on + strand at 485.197 kb on - strand at 485.626 kb on - strand, within H281DRAFT_03414 at 485.802 kb on + strand at 485.802 kb on + strand at 485.804 kb on + strand at 486.017 kb on - strand, within H281DRAFT_03415 at 486.299 kb on + strand, within H281DRAFT_03415 at 486.430 kb on - strand, within H281DRAFT_03415 at 486.482 kb on + strand, within H281DRAFT_03415 at 487.023 kb on - strand at 487.411 kb on + strand, within H281DRAFT_03416 at 487.444 kb on + strand, within H281DRAFT_03416 at 487.532 kb on - strand, within H281DRAFT_03416 at 487.631 kb on - strand at 487.667 kb on - strand, within H281DRAFT_03416
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 484,988 - +1.5 485,189 + +0.9 485,197 - +1.5 485,626 - H281DRAFT_03414 0.73 -1.0 485,802 + -3.0 485,802 + +0.7 485,804 + +0.4 486,017 - H281DRAFT_03415 0.16 +0.3 486,299 + H281DRAFT_03415 0.50 -1.9 486,430 - H281DRAFT_03415 0.66 +0.9 486,482 + H281DRAFT_03415 0.73 -0.7 487,023 - -1.5 487,411 + H281DRAFT_03416 0.15 -3.4 487,444 + H281DRAFT_03416 0.17 +0.5 487,532 - H281DRAFT_03416 0.20 +0.4 487,631 - -1.9 487,667 - H281DRAFT_03416 0.26 +0.9
Or see this region's nucleotide sequence