Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03282

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03281 and H281DRAFT_03282 overlap by 11 nucleotidesH281DRAFT_03282 and H281DRAFT_03283 overlap by 4 nucleotides H281DRAFT_03281: H281DRAFT_03281 - Glycosyltransferase, at 338,170 to 339,126 _03281 H281DRAFT_03282: H281DRAFT_03282 - ADP-heptose:LPS heptosyltransferase, at 339,116 to 340,255 _03282 H281DRAFT_03283: H281DRAFT_03283 - Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase, at 340,252 to 341,331 _03283 Position (kb) 339 340 341Strain fitness (log2 ratio) -1 0 1 2 3at 338.588 kb on - strand, within H281DRAFT_03281at 338.886 kb on - strand, within H281DRAFT_03281at 339.062 kb on + strandat 339.876 kb on - strand, within H281DRAFT_03282at 339.889 kb on - strand, within H281DRAFT_03282at 340.077 kb on + strand, within H281DRAFT_03282at 340.395 kb on - strand, within H281DRAFT_03283at 340.499 kb on + strand, within H281DRAFT_03283

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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338,588 - H281DRAFT_03281 0.44 +0.3
338,886 - H281DRAFT_03281 0.75 +0.3
339,062 + +0.2
339,876 - H281DRAFT_03282 0.67 +3.2
339,889 - H281DRAFT_03282 0.68 +0.5
340,077 + H281DRAFT_03282 0.84 -0.2
340,395 - H281DRAFT_03283 0.13 +0.6
340,499 + H281DRAFT_03283 0.23 -0.1

Or see this region's nucleotide sequence