Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03220

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03219 and H281DRAFT_03220 are separated by 72 nucleotidesH281DRAFT_03220 and H281DRAFT_03221 are separated by 218 nucleotides H281DRAFT_03219: H281DRAFT_03219 - gamma-glutamylputrescine oxidase, at 266,793 to 268,082 _03219 H281DRAFT_03220: H281DRAFT_03220 - 4-hydroxy-tetrahydrodipicolinate synthase, at 268,155 to 269,087 _03220 H281DRAFT_03221: H281DRAFT_03221 - DNA-binding transcriptional regulator, LysR family, at 269,306 to 270,355 _03221 Position (kb) 268 269 270Strain fitness (log2 ratio) -3 -2 -1 0 1at 267.325 kb on + strand, within H281DRAFT_03219at 267.325 kb on + strand, within H281DRAFT_03219at 267.364 kb on + strand, within H281DRAFT_03219at 267.717 kb on + strand, within H281DRAFT_03219at 267.744 kb on + strand, within H281DRAFT_03219at 267.745 kb on - strandat 267.805 kb on - strand, within H281DRAFT_03219at 267.963 kb on + strandat 268.251 kb on + strand, within H281DRAFT_03220at 268.251 kb on + strandat 268.580 kb on - strand, within H281DRAFT_03220at 269.254 kb on + strandat 269.571 kb on + strand, within H281DRAFT_03221

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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267,325 + H281DRAFT_03219 0.41 +0.4
267,325 + H281DRAFT_03219 0.41 -2.4
267,364 + H281DRAFT_03219 0.44 -2.8
267,717 + H281DRAFT_03219 0.72 -0.5
267,744 + H281DRAFT_03219 0.74 +0.1
267,745 - +1.2
267,805 - H281DRAFT_03219 0.78 +1.5
267,963 + +0.4
268,251 + H281DRAFT_03220 0.10 +0.9
268,251 + +0.5
268,580 - H281DRAFT_03220 0.46 +0.7
269,254 + +0.0
269,571 + H281DRAFT_03221 0.25 +0.6

Or see this region's nucleotide sequence