Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03045

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03043 and H281DRAFT_03044 are separated by 48 nucleotidesH281DRAFT_03044 and H281DRAFT_03045 are separated by 77 nucleotidesH281DRAFT_03045 and H281DRAFT_03046 are separated by 143 nucleotides H281DRAFT_03043: H281DRAFT_03043 - Oxidoreductase-like protein, N-terminal, at 73,785 to 74,021 _03043 H281DRAFT_03044: H281DRAFT_03044 - NAD-dependent protein deacetylase, SIR2 family, at 74,070 to 74,939 _03044 H281DRAFT_03045: H281DRAFT_03045 - Protein of unknown function (DUF938), at 75,017 to 75,646 _03045 H281DRAFT_03046: H281DRAFT_03046 - 6-phosphogluconate dehydrogenase (decarboxylating), at 75,790 to 77,199 _03046 Position (kb) 75 76Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 74.958 kb on + strandat 74.958 kb on + strandat 74.958 kb on + strandat 74.959 kb on - strandat 74.959 kb on - strandat 74.975 kb on + strandat 74.975 kb on + strandat 74.976 kb on - strandat 74.976 kb on - strandat 74.976 kb on - strandat 75.009 kb on - strandat 75.009 kb on - strandat 75.161 kb on + strand, within H281DRAFT_03045at 75.313 kb on - strand, within H281DRAFT_03045at 75.420 kb on + strand, within H281DRAFT_03045at 75.420 kb on + strand, within H281DRAFT_03045at 75.420 kb on + strand, within H281DRAFT_03045at 75.421 kb on - strand, within H281DRAFT_03045at 75.425 kb on + strand, within H281DRAFT_03045at 75.426 kb on - strand, within H281DRAFT_03045at 75.426 kb on - strand, within H281DRAFT_03045at 75.426 kb on - strand, within H281DRAFT_03045at 75.431 kb on + strand, within H281DRAFT_03045at 75.440 kb on + strand, within H281DRAFT_03045at 75.883 kb on + strandat 76.235 kb on - strand, within H281DRAFT_03046at 76.304 kb on - strand, within H281DRAFT_03046at 76.304 kb on - strand, within H281DRAFT_03046at 76.304 kb on - strand, within H281DRAFT_03046at 76.304 kb on - strand, within H281DRAFT_03046at 76.348 kb on - strand, within H281DRAFT_03046at 76.391 kb on - strand, within H281DRAFT_03046at 76.391 kb on - strand, within H281DRAFT_03046at 76.444 kb on + strand, within H281DRAFT_03046at 76.445 kb on - strand, within H281DRAFT_03046at 76.477 kb on + strand, within H281DRAFT_03046at 76.478 kb on - strand, within H281DRAFT_03046at 76.478 kb on - strand, within H281DRAFT_03046at 76.478 kb on - strand, within H281DRAFT_03046at 76.478 kb on - strand, within H281DRAFT_03046at 76.478 kb on - strand, within H281DRAFT_03046at 76.575 kb on + strand, within H281DRAFT_03046at 76.632 kb on + strand, within H281DRAFT_03046at 76.633 kb on - strand, within H281DRAFT_03046

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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74,958 + +1.7
74,958 + -0.9
74,958 + +0.6
74,959 - +0.5
74,959 - -1.0
74,975 + +0.6
74,975 + +0.9
74,976 - -1.0
74,976 - +0.2
74,976 - -0.0
75,009 - +0.2
75,009 - +0.4
75,161 + H281DRAFT_03045 0.23 -0.9
75,313 - H281DRAFT_03045 0.47 -0.4
75,420 + H281DRAFT_03045 0.64 +0.2
75,420 + H281DRAFT_03045 0.64 -1.2
75,420 + H281DRAFT_03045 0.64 -1.4
75,421 - H281DRAFT_03045 0.64 +0.8
75,425 + H281DRAFT_03045 0.65 -0.9
75,426 - H281DRAFT_03045 0.65 -1.0
75,426 - H281DRAFT_03045 0.65 -0.5
75,426 - H281DRAFT_03045 0.65 -0.1
75,431 + H281DRAFT_03045 0.66 -0.2
75,440 + H281DRAFT_03045 0.67 -0.4
75,883 + +0.8
76,235 - H281DRAFT_03046 0.32 -3.5
76,304 - H281DRAFT_03046 0.36 -0.3
76,304 - H281DRAFT_03046 0.36 +0.2
76,304 - H281DRAFT_03046 0.36 -0.8
76,304 - H281DRAFT_03046 0.36 -0.1
76,348 - H281DRAFT_03046 0.40 +0.3
76,391 - H281DRAFT_03046 0.43 -0.6
76,391 - H281DRAFT_03046 0.43 +1.9
76,444 + H281DRAFT_03046 0.46 -0.4
76,445 - H281DRAFT_03046 0.46 -0.1
76,477 + H281DRAFT_03046 0.49 -0.3
76,478 - H281DRAFT_03046 0.49 +0.4
76,478 - H281DRAFT_03046 0.49 +0.1
76,478 - H281DRAFT_03046 0.49 +1.6
76,478 - H281DRAFT_03046 0.49 +0.5
76,478 - H281DRAFT_03046 0.49 +1.7
76,575 + H281DRAFT_03046 0.56 -0.8
76,632 + H281DRAFT_03046 0.60 -1.2
76,633 - H281DRAFT_03046 0.60 +0.2

Or see this region's nucleotide sequence