Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02935 and H281DRAFT_02936 are separated by 380 nucleotides H281DRAFT_02936 and H281DRAFT_02937 are separated by 71 nucleotides H281DRAFT_02937 and H281DRAFT_02938 are separated by 203 nucleotides
H281DRAFT_02935: H281DRAFT_02935 - ATP-dependent transcriptional regulator, at 545,207 to 548,404
_02935
H281DRAFT_02936: H281DRAFT_02936 - nitrilase, at 548,785 to 549,723
_02936
H281DRAFT_02937: H281DRAFT_02937 - Lipocalin-like domain-containing protein, at 549,795 to 550,307
_02937
H281DRAFT_02938: H281DRAFT_02938 - Fucose 4-O-acetylase, at 550,511 to 551,602
_02938
Position (kb) 548
549
550 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 548.213 kb on + strand at 548.214 kb on - strand at 548.241 kb on + strand at 548.241 kb on + strand at 548.411 kb on + strand at 548.412 kb on - strand at 548.487 kb on + strand at 548.846 kb on - strand at 548.862 kb on - strand at 548.930 kb on - strand, within H281DRAFT_02936 at 549.168 kb on - strand, within H281DRAFT_02936 at 549.205 kb on + strand, within H281DRAFT_02936 at 549.216 kb on - strand, within H281DRAFT_02936 at 549.216 kb on - strand, within H281DRAFT_02936 at 549.777 kb on - strand at 549.982 kb on + strand, within H281DRAFT_02937 at 550.099 kb on + strand at 550.331 kb on - strand at 550.539 kb on - strand at 550.682 kb on + strand, within H281DRAFT_02938 at 550.683 kb on - strand, within H281DRAFT_02938
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 548,213 + +0.2 548,214 - +0.6 548,241 + -0.1 548,241 + +0.2 548,411 + +0.8 548,412 - -0.6 548,487 + -1.6 548,846 - +1.0 548,862 - -0.2 548,930 - H281DRAFT_02936 0.15 -0.7 549,168 - H281DRAFT_02936 0.41 -0.5 549,205 + H281DRAFT_02936 0.45 -0.1 549,216 - H281DRAFT_02936 0.46 -0.2 549,216 - H281DRAFT_02936 0.46 +0.4 549,777 - +0.3 549,982 + H281DRAFT_02937 0.36 -0.3 550,099 + +0.2 550,331 - -0.2 550,539 - -2.9 550,682 + H281DRAFT_02938 0.16 -0.6 550,683 - H281DRAFT_02938 0.16 +0.7
Or see this region's nucleotide sequence