Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02250

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02248 and H281DRAFT_02249 are separated by 33 nucleotidesH281DRAFT_02249 and H281DRAFT_02250 are separated by 200 nucleotidesH281DRAFT_02250 and H281DRAFT_02251 are separated by 554 nucleotides H281DRAFT_02248: H281DRAFT_02248 - Predicted esterase of the alpha-beta hydrolase superfamily, at 396,180 to 397,043 _02248 H281DRAFT_02249: H281DRAFT_02249 - uncharacterized domain 1-containing protein, at 397,077 to 397,481 _02249 H281DRAFT_02250: H281DRAFT_02250 - tRNA_Lys_CTT, at 397,682 to 397,757 _02250 H281DRAFT_02251: H281DRAFT_02251 - hypothetical protein, at 398,312 to 399,076 _02251 Position (kb) 397 398Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 396.754 kb on + strand, within H281DRAFT_02248at 396.754 kb on + strand, within H281DRAFT_02248at 396.754 kb on + strand, within H281DRAFT_02248at 396.754 kb on + strand, within H281DRAFT_02248at 396.755 kb on - strand, within H281DRAFT_02248at 396.755 kb on - strand, within H281DRAFT_02248at 396.755 kb on - strand, within H281DRAFT_02248at 396.778 kb on + strand, within H281DRAFT_02248at 396.779 kb on - strand, within H281DRAFT_02248at 396.779 kb on - strand, within H281DRAFT_02248at 396.779 kb on - strand, within H281DRAFT_02248at 396.829 kb on + strand, within H281DRAFT_02248at 396.830 kb on - strand, within H281DRAFT_02248at 396.830 kb on - strand, within H281DRAFT_02248at 396.852 kb on + strand, within H281DRAFT_02248at 396.865 kb on + strand, within H281DRAFT_02248at 396.865 kb on + strand, within H281DRAFT_02248at 396.866 kb on - strand, within H281DRAFT_02248at 396.866 kb on - strand, within H281DRAFT_02248at 396.898 kb on + strand, within H281DRAFT_02248at 396.899 kb on - strand, within H281DRAFT_02248at 397.057 kb on - strandat 397.057 kb on - strandat 397.079 kb on - strandat 397.094 kb on - strandat 397.094 kb on - strandat 397.094 kb on - strandat 397.094 kb on - strandat 397.213 kb on - strand, within H281DRAFT_02249at 397.613 kb on + strandat 397.614 kb on - strandat 397.773 kb on + strandat 397.773 kb on + strandat 397.818 kb on + strandat 397.818 kb on + strandat 397.818 kb on + strandat 397.818 kb on + strandat 397.819 kb on - strandat 397.819 kb on - strandat 397.819 kb on - strandat 397.819 kb on - strandat 397.830 kb on - strandat 397.830 kb on - strandat 397.838 kb on + strandat 397.838 kb on + strandat 397.839 kb on - strandat 397.839 kb on - strandat 397.839 kb on - strandat 397.858 kb on + strandat 397.858 kb on + strandat 397.858 kb on + strandat 397.859 kb on - strandat 397.859 kb on - strandat 397.859 kb on - strandat 397.867 kb on - strandat 397.999 kb on - strandat 398.001 kb on + strandat 398.001 kb on + strandat 398.001 kb on + strandat 398.001 kb on + strandat 398.001 kb on + strandat 398.002 kb on - strandat 398.002 kb on - strandat 398.002 kb on - strandat 398.002 kb on - strandat 398.002 kb on - strandat 398.002 kb on - strandat 398.002 kb on - strandat 398.166 kb on + strandat 398.166 kb on + strandat 398.166 kb on + strandat 398.167 kb on - strandat 398.167 kb on - strandat 398.167 kb on - strandat 398.210 kb on - strandat 398.271 kb on + strandat 398.424 kb on + strand, within H281DRAFT_02251at 398.493 kb on + strand, within H281DRAFT_02251at 398.505 kb on + strandat 398.506 kb on - strand, within H281DRAFT_02251at 398.506 kb on - strand, within H281DRAFT_02251at 398.621 kb on - strand, within H281DRAFT_02251at 398.624 kb on + strand, within H281DRAFT_02251at 398.625 kb on - strand, within H281DRAFT_02251at 398.649 kb on + strand, within H281DRAFT_02251at 398.649 kb on + strand, within H281DRAFT_02251at 398.649 kb on + strand, within H281DRAFT_02251at 398.650 kb on - strand, within H281DRAFT_02251at 398.650 kb on - strand, within H281DRAFT_02251at 398.651 kb on + strand, within H281DRAFT_02251at 398.651 kb on + strand, within H281DRAFT_02251at 398.651 kb on + strand, within H281DRAFT_02251at 398.651 kb on + strand, within H281DRAFT_02251at 398.652 kb on - strand, within H281DRAFT_02251at 398.652 kb on - strand, within H281DRAFT_02251at 398.652 kb on - strand, within H281DRAFT_02251at 398.652 kb on - strand, within H281DRAFT_02251at 398.652 kb on - strand, within H281DRAFT_02251at 398.652 kb on - strand, within H281DRAFT_02251

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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396,754 + H281DRAFT_02248 0.66 -0.3
396,754 + H281DRAFT_02248 0.66 +0.1
396,754 + H281DRAFT_02248 0.66 -0.5
396,754 + H281DRAFT_02248 0.66 +0.2
396,755 - H281DRAFT_02248 0.67 +0.2
396,755 - H281DRAFT_02248 0.67 -1.5
396,755 - H281DRAFT_02248 0.67 -0.0
396,778 + H281DRAFT_02248 0.69 +1.0
396,779 - H281DRAFT_02248 0.69 +0.3
396,779 - H281DRAFT_02248 0.69 -0.3
396,779 - H281DRAFT_02248 0.69 -1.1
396,829 + H281DRAFT_02248 0.75 -0.5
396,830 - H281DRAFT_02248 0.75 -0.9
396,830 - H281DRAFT_02248 0.75 +2.7
396,852 + H281DRAFT_02248 0.78 -1.0
396,865 + H281DRAFT_02248 0.79 +1.0
396,865 + H281DRAFT_02248 0.79 -0.2
396,866 - H281DRAFT_02248 0.79 +0.1
396,866 - H281DRAFT_02248 0.79 -0.8
396,898 + H281DRAFT_02248 0.83 -1.2
396,899 - H281DRAFT_02248 0.83 +0.6
397,057 - +0.0
397,057 - -3.2
397,079 - +0.6
397,094 - -3.3
397,094 - +1.2
397,094 - +0.6
397,094 - -0.4
397,213 - H281DRAFT_02249 0.34 -1.7
397,613 + +0.3
397,614 - +0.1
397,773 + +0.4
397,773 + +0.6
397,818 + -0.1
397,818 + -1.5
397,818 + -0.1
397,818 + +0.3
397,819 - -1.9
397,819 - +0.7
397,819 - -1.6
397,819 - +0.3
397,830 - -0.1
397,830 - -0.7
397,838 + -0.2
397,838 + -0.8
397,839 - -0.1
397,839 - +1.8
397,839 - -2.5
397,858 + -1.4
397,858 + -0.3
397,858 + +0.3
397,859 - +0.7
397,859 - -0.1
397,859 - -0.1
397,867 - +0.2
397,999 - -0.4
398,001 + +0.5
398,001 + -0.3
398,001 + -2.6
398,001 + -1.2
398,001 + +1.1
398,002 - -0.8
398,002 - -0.9
398,002 - +0.1
398,002 - -1.1
398,002 - -0.2
398,002 - -0.2
398,002 - +1.4
398,166 + -0.3
398,166 + +0.9
398,166 + +0.0
398,167 - +1.0
398,167 - +0.3
398,167 - +0.1
398,210 - -0.3
398,271 + +0.3
398,424 + H281DRAFT_02251 0.15 +0.1
398,493 + H281DRAFT_02251 0.24 -0.3
398,505 + +0.2
398,506 - H281DRAFT_02251 0.25 -2.8
398,506 - H281DRAFT_02251 0.25 -1.1
398,621 - H281DRAFT_02251 0.40 -0.0
398,624 + H281DRAFT_02251 0.41 -0.7
398,625 - H281DRAFT_02251 0.41 -0.5
398,649 + H281DRAFT_02251 0.44 +0.4
398,649 + H281DRAFT_02251 0.44 -1.3
398,649 + H281DRAFT_02251 0.44 -2.4
398,650 - H281DRAFT_02251 0.44 +0.3
398,650 - H281DRAFT_02251 0.44 -0.6
398,651 + H281DRAFT_02251 0.44 -0.4
398,651 + H281DRAFT_02251 0.44 +0.7
398,651 + H281DRAFT_02251 0.44 -0.2
398,651 + H281DRAFT_02251 0.44 -0.5
398,652 - H281DRAFT_02251 0.44 -2.4
398,652 - H281DRAFT_02251 0.44 +0.5
398,652 - H281DRAFT_02251 0.44 +0.5
398,652 - H281DRAFT_02251 0.44 -1.3
398,652 - H281DRAFT_02251 0.44 -0.2
398,652 - H281DRAFT_02251 0.44 +0.4

Or see this region's nucleotide sequence