Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02137

Experiment: Malonic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02135 and H281DRAFT_02136 are separated by 126 nucleotidesH281DRAFT_02136 and H281DRAFT_02137 are separated by 4 nucleotidesH281DRAFT_02137 and H281DRAFT_02138 overlap by 8 nucleotides H281DRAFT_02135: H281DRAFT_02135 - Protein of unknown function (DUF3892), at 273,536 to 273,835 _02135 H281DRAFT_02136: H281DRAFT_02136 - hypothetical protein, at 273,962 to 274,549 _02136 H281DRAFT_02137: H281DRAFT_02137 - type I restriction enzyme M protein, at 274,554 to 276,065 _02137 H281DRAFT_02138: H281DRAFT_02138 - type I restriction enzyme, S subunit, at 276,058 to 277,431 _02138 Position (kb) 274 275 276 277Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 273.619 kb on - strand, within H281DRAFT_02135at 273.619 kb on - strand, within H281DRAFT_02135at 273.670 kb on + strand, within H281DRAFT_02135at 273.687 kb on + strand, within H281DRAFT_02135at 273.687 kb on + strand, within H281DRAFT_02135at 273.688 kb on - strand, within H281DRAFT_02135at 273.736 kb on + strand, within H281DRAFT_02135at 273.736 kb on + strand, within H281DRAFT_02135at 273.757 kb on + strand, within H281DRAFT_02135at 273.805 kb on + strand, within H281DRAFT_02135at 273.806 kb on - strandat 273.806 kb on - strandat 273.806 kb on - strandat 273.817 kb on + strandat 273.817 kb on + strandat 273.818 kb on - strandat 273.818 kb on - strandat 273.818 kb on - strandat 273.818 kb on - strandat 273.838 kb on + strandat 273.838 kb on + strandat 273.905 kb on + strandat 273.905 kb on + strandat 273.905 kb on + strandat 273.906 kb on - strandat 273.906 kb on - strandat 273.972 kb on + strandat 273.976 kb on - strandat 274.129 kb on + strandat 274.129 kb on + strand, within H281DRAFT_02136at 274.129 kb on + strand, within H281DRAFT_02136at 274.190 kb on + strand, within H281DRAFT_02136at 274.540 kb on + strandat 274.540 kb on + strandat 274.644 kb on + strandat 274.653 kb on + strandat 274.653 kb on + strandat 274.653 kb on + strandat 274.654 kb on - strandat 274.680 kb on + strandat 274.717 kb on - strand, within H281DRAFT_02137at 274.903 kb on + strand, within H281DRAFT_02137at 274.904 kb on - strand, within H281DRAFT_02137at 275.053 kb on - strand, within H281DRAFT_02137at 275.109 kb on + strand, within H281DRAFT_02137at 275.475 kb on + strand, within H281DRAFT_02137at 275.475 kb on + strand, within H281DRAFT_02137at 275.478 kb on - strand, within H281DRAFT_02137at 275.520 kb on + strand, within H281DRAFT_02137at 275.778 kb on + strand, within H281DRAFT_02137at 275.779 kb on - strand, within H281DRAFT_02137at 276.016 kb on + strandat 276.064 kb on - strandat 276.122 kb on + strandat 276.122 kb on + strandat 276.122 kb on + strandat 276.123 kb on - strandat 276.162 kb on - strandat 276.258 kb on + strand, within H281DRAFT_02138at 276.258 kb on + strand, within H281DRAFT_02138at 276.258 kb on + strand, within H281DRAFT_02138at 276.407 kb on + strand, within H281DRAFT_02138at 276.407 kb on + strand, within H281DRAFT_02138at 276.407 kb on + strand, within H281DRAFT_02138at 276.407 kb on + strand, within H281DRAFT_02138at 276.407 kb on + strandat 276.407 kb on + strandat 276.407 kb on + strand, within H281DRAFT_02138at 276.408 kb on - strand, within H281DRAFT_02138at 276.408 kb on - strand, within H281DRAFT_02138at 276.408 kb on - strand, within H281DRAFT_02138at 276.408 kb on - strand, within H281DRAFT_02138at 276.458 kb on + strand, within H281DRAFT_02138at 276.459 kb on - strand, within H281DRAFT_02138at 276.624 kb on + strand, within H281DRAFT_02138at 276.624 kb on + strand, within H281DRAFT_02138at 276.625 kb on - strand, within H281DRAFT_02138at 276.625 kb on - strand, within H281DRAFT_02138at 276.643 kb on + strand, within H281DRAFT_02138at 276.643 kb on + strand, within H281DRAFT_02138at 276.644 kb on - strand, within H281DRAFT_02138at 276.834 kb on - strand, within H281DRAFT_02138at 276.834 kb on - strand, within H281DRAFT_02138at 276.858 kb on + strand, within H281DRAFT_02138at 276.859 kb on - strand, within H281DRAFT_02138at 276.859 kb on - strand, within H281DRAFT_02138at 276.905 kb on + strand, within H281DRAFT_02138at 276.906 kb on - strand, within H281DRAFT_02138at 276.922 kb on + strand, within H281DRAFT_02138at 276.923 kb on - strand, within H281DRAFT_02138at 276.961 kb on + strand, within H281DRAFT_02138at 276.961 kb on + strand, within H281DRAFT_02138at 276.961 kb on + strand, within H281DRAFT_02138at 276.961 kb on + strand, within H281DRAFT_02138at 276.967 kb on + strand, within H281DRAFT_02138at 276.967 kb on + strand, within H281DRAFT_02138at 276.991 kb on + strand, within H281DRAFT_02138at 276.992 kb on - strand, within H281DRAFT_02138at 277.040 kb on + strand, within H281DRAFT_02138at 277.040 kb on + strand, within H281DRAFT_02138at 277.041 kb on - strand, within H281DRAFT_02138at 277.043 kb on + strand, within H281DRAFT_02138at 277.043 kb on + strand, within H281DRAFT_02138at 277.043 kb on + strand, within H281DRAFT_02138at 277.043 kb on + strand, within H281DRAFT_02138at 277.043 kb on + strand, within H281DRAFT_02138at 277.044 kb on - strand, within H281DRAFT_02138at 277.044 kb on - strand, within H281DRAFT_02138at 277.044 kb on - strand, within H281DRAFT_02138at 277.044 kb on - strand, within H281DRAFT_02138at 277.048 kb on + strand, within H281DRAFT_02138at 277.048 kb on + strand, within H281DRAFT_02138

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
remove
273,619 - H281DRAFT_02135 0.28 +0.2
273,619 - H281DRAFT_02135 0.28 -1.0
273,670 + H281DRAFT_02135 0.45 +0.9
273,687 + H281DRAFT_02135 0.50 +0.2
273,687 + H281DRAFT_02135 0.50 -0.7
273,688 - H281DRAFT_02135 0.51 +0.1
273,736 + H281DRAFT_02135 0.67 +1.0
273,736 + H281DRAFT_02135 0.67 -0.0
273,757 + H281DRAFT_02135 0.74 -0.5
273,805 + H281DRAFT_02135 0.90 +1.5
273,806 - +0.5
273,806 - +0.2
273,806 - -2.0
273,817 + +3.0
273,817 + -1.9
273,818 - +0.3
273,818 - -0.6
273,818 - +0.7
273,818 - -1.1
273,838 + -0.2
273,838 + -0.1
273,905 + +0.2
273,905 + -2.3
273,905 + +1.4
273,906 - -2.9
273,906 - +0.3
273,972 + -1.0
273,976 - +0.8
274,129 + -0.5
274,129 + H281DRAFT_02136 0.28 -2.8
274,129 + H281DRAFT_02136 0.28 -2.2
274,190 + H281DRAFT_02136 0.39 -0.1
274,540 + +1.9
274,540 + -0.7
274,644 + -0.8
274,653 + -0.7
274,653 + -2.5
274,653 + +1.1
274,654 - -1.0
274,680 + -1.8
274,717 - H281DRAFT_02137 0.11 -1.0
274,903 + H281DRAFT_02137 0.23 -1.4
274,904 - H281DRAFT_02137 0.23 -0.5
275,053 - H281DRAFT_02137 0.33 +0.8
275,109 + H281DRAFT_02137 0.37 +0.3
275,475 + H281DRAFT_02137 0.61 +2.8
275,475 + H281DRAFT_02137 0.61 +1.8
275,478 - H281DRAFT_02137 0.61 +0.2
275,520 + H281DRAFT_02137 0.64 -2.1
275,778 + H281DRAFT_02137 0.81 -4.0
275,779 - H281DRAFT_02137 0.81 -1.5
276,016 + -2.5
276,064 - +0.1
276,122 + -0.1
276,122 + -0.3
276,122 + -1.0
276,123 - +1.9
276,162 - +1.0
276,258 + H281DRAFT_02138 0.15 +0.3
276,258 + H281DRAFT_02138 0.15 +0.6
276,258 + H281DRAFT_02138 0.15 -0.2
276,407 + H281DRAFT_02138 0.25 +1.9
276,407 + H281DRAFT_02138 0.25 +0.0
276,407 + H281DRAFT_02138 0.25 +0.3
276,407 + H281DRAFT_02138 0.25 -0.9
276,407 + +1.2
276,407 + -1.2
276,407 + H281DRAFT_02138 0.25 -0.5
276,408 - H281DRAFT_02138 0.25 -0.3
276,408 - H281DRAFT_02138 0.25 +0.1
276,408 - H281DRAFT_02138 0.25 +1.3
276,408 - H281DRAFT_02138 0.25 +0.0
276,458 + H281DRAFT_02138 0.29 +0.1
276,459 - H281DRAFT_02138 0.29 -0.4
276,624 + H281DRAFT_02138 0.41 +2.1
276,624 + H281DRAFT_02138 0.41 +2.0
276,625 - H281DRAFT_02138 0.41 -2.6
276,625 - H281DRAFT_02138 0.41 -1.4
276,643 + H281DRAFT_02138 0.43 +0.1
276,643 + H281DRAFT_02138 0.43 -0.8
276,644 - H281DRAFT_02138 0.43 -1.1
276,834 - H281DRAFT_02138 0.56 -0.2
276,834 - H281DRAFT_02138 0.56 -0.9
276,858 + H281DRAFT_02138 0.58 +0.2
276,859 - H281DRAFT_02138 0.58 -0.5
276,859 - H281DRAFT_02138 0.58 +1.3
276,905 + H281DRAFT_02138 0.62 +0.2
276,906 - H281DRAFT_02138 0.62 +0.4
276,922 + H281DRAFT_02138 0.63 -1.3
276,923 - H281DRAFT_02138 0.63 -3.3
276,961 + H281DRAFT_02138 0.66 -0.6
276,961 + H281DRAFT_02138 0.66 -1.6
276,961 + H281DRAFT_02138 0.66 +0.6
276,961 + H281DRAFT_02138 0.66 -0.2
276,967 + H281DRAFT_02138 0.66 -2.8
276,967 + H281DRAFT_02138 0.66 -2.9
276,991 + H281DRAFT_02138 0.68 -0.9
276,992 - H281DRAFT_02138 0.68 -1.1
277,040 + H281DRAFT_02138 0.71 -0.2
277,040 + H281DRAFT_02138 0.71 -1.8
277,041 - H281DRAFT_02138 0.72 +1.3
277,043 + H281DRAFT_02138 0.72 -1.3
277,043 + H281DRAFT_02138 0.72 -0.3
277,043 + H281DRAFT_02138 0.72 +0.1
277,043 + H281DRAFT_02138 0.72 +0.5
277,043 + H281DRAFT_02138 0.72 -0.5
277,044 - H281DRAFT_02138 0.72 +0.7
277,044 - H281DRAFT_02138 0.72 -0.4
277,044 - H281DRAFT_02138 0.72 -1.6
277,044 - H281DRAFT_02138 0.72 -1.2
277,048 + H281DRAFT_02138 0.72 -0.6
277,048 + H281DRAFT_02138 0.72 -2.3

Or see this region's nucleotide sequence