Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02136

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02134 and H281DRAFT_02135 are separated by 192 nucleotidesH281DRAFT_02135 and H281DRAFT_02136 are separated by 126 nucleotidesH281DRAFT_02136 and H281DRAFT_02137 are separated by 4 nucleotides H281DRAFT_02134: H281DRAFT_02134 - hypothetical protein, at 272,468 to 273,343 _02134 H281DRAFT_02135: H281DRAFT_02135 - Protein of unknown function (DUF3892), at 273,536 to 273,835 _02135 H281DRAFT_02136: H281DRAFT_02136 - hypothetical protein, at 273,962 to 274,549 _02136 H281DRAFT_02137: H281DRAFT_02137 - type I restriction enzyme M protein, at 274,554 to 276,065 _02137 Position (kb) 273 274 275Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 272.992 kb on - strand, within H281DRAFT_02134at 273.089 kb on + strand, within H281DRAFT_02134at 273.109 kb on + strand, within H281DRAFT_02134at 273.110 kb on - strand, within H281DRAFT_02134at 273.112 kb on - strand, within H281DRAFT_02134at 273.134 kb on - strand, within H281DRAFT_02134at 273.134 kb on - strand, within H281DRAFT_02134at 273.209 kb on + strand, within H281DRAFT_02134at 273.237 kb on - strand, within H281DRAFT_02134at 273.252 kb on + strand, within H281DRAFT_02134at 273.252 kb on + strand, within H281DRAFT_02134at 273.253 kb on - strand, within H281DRAFT_02134at 273.322 kb on + strandat 273.344 kb on - strandat 273.357 kb on + strandat 273.357 kb on + strandat 273.357 kb on + strandat 273.357 kb on + strandat 273.358 kb on - strandat 273.358 kb on - strandat 273.430 kb on + strandat 273.453 kb on - strandat 273.453 kb on - strandat 273.453 kb on - strandat 273.459 kb on + strandat 273.459 kb on + strandat 273.503 kb on + strandat 273.619 kb on - strand, within H281DRAFT_02135at 273.619 kb on - strand, within H281DRAFT_02135at 273.670 kb on + strand, within H281DRAFT_02135at 273.687 kb on + strand, within H281DRAFT_02135at 273.687 kb on + strand, within H281DRAFT_02135at 273.688 kb on - strand, within H281DRAFT_02135at 273.736 kb on + strand, within H281DRAFT_02135at 273.736 kb on + strand, within H281DRAFT_02135at 273.757 kb on + strand, within H281DRAFT_02135at 273.805 kb on + strand, within H281DRAFT_02135at 273.806 kb on - strandat 273.806 kb on - strandat 273.806 kb on - strandat 273.817 kb on + strandat 273.817 kb on + strandat 273.818 kb on - strandat 273.818 kb on - strandat 273.818 kb on - strandat 273.818 kb on - strandat 273.838 kb on + strandat 273.838 kb on + strandat 273.905 kb on + strandat 273.905 kb on + strandat 273.905 kb on + strandat 273.906 kb on - strandat 273.906 kb on - strandat 273.972 kb on + strandat 273.976 kb on - strandat 274.129 kb on + strandat 274.129 kb on + strand, within H281DRAFT_02136at 274.129 kb on + strand, within H281DRAFT_02136at 274.190 kb on + strand, within H281DRAFT_02136at 274.540 kb on + strandat 274.540 kb on + strandat 274.644 kb on + strandat 274.653 kb on + strandat 274.653 kb on + strandat 274.653 kb on + strandat 274.654 kb on - strandat 274.680 kb on + strandat 274.717 kb on - strand, within H281DRAFT_02137at 274.903 kb on + strand, within H281DRAFT_02137at 274.904 kb on - strand, within H281DRAFT_02137at 275.053 kb on - strand, within H281DRAFT_02137at 275.109 kb on + strand, within H281DRAFT_02137at 275.475 kb on + strand, within H281DRAFT_02137at 275.475 kb on + strand, within H281DRAFT_02137at 275.478 kb on - strand, within H281DRAFT_02137at 275.520 kb on + strand, within H281DRAFT_02137

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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272,992 - H281DRAFT_02134 0.60 +1.8
273,089 + H281DRAFT_02134 0.71 -1.2
273,109 + H281DRAFT_02134 0.73 -0.2
273,110 - H281DRAFT_02134 0.73 -0.1
273,112 - H281DRAFT_02134 0.74 +0.2
273,134 - H281DRAFT_02134 0.76 -1.1
273,134 - H281DRAFT_02134 0.76 -1.1
273,209 + H281DRAFT_02134 0.85 -0.7
273,237 - H281DRAFT_02134 0.88 -0.4
273,252 + H281DRAFT_02134 0.89 -0.1
273,252 + H281DRAFT_02134 0.89 -0.3
273,253 - H281DRAFT_02134 0.90 +0.0
273,322 + +1.0
273,344 - -0.9
273,357 + +2.2
273,357 + -0.0
273,357 + +0.8
273,357 + +0.8
273,358 - +0.8
273,358 - -0.1
273,430 + -0.1
273,453 - +0.2
273,453 - -0.6
273,453 - -1.0
273,459 + -1.0
273,459 + +0.3
273,503 + -0.2
273,619 - H281DRAFT_02135 0.28 +0.2
273,619 - H281DRAFT_02135 0.28 -1.0
273,670 + H281DRAFT_02135 0.45 +0.9
273,687 + H281DRAFT_02135 0.50 +0.2
273,687 + H281DRAFT_02135 0.50 -0.7
273,688 - H281DRAFT_02135 0.51 +0.1
273,736 + H281DRAFT_02135 0.67 +1.0
273,736 + H281DRAFT_02135 0.67 -0.0
273,757 + H281DRAFT_02135 0.74 -0.5
273,805 + H281DRAFT_02135 0.90 +1.5
273,806 - +0.5
273,806 - +0.2
273,806 - -2.0
273,817 + +3.0
273,817 + -1.9
273,818 - +0.3
273,818 - -0.6
273,818 - +0.7
273,818 - -1.1
273,838 + -0.2
273,838 + -0.1
273,905 + +0.2
273,905 + -2.3
273,905 + +1.4
273,906 - -2.9
273,906 - +0.3
273,972 + -1.0
273,976 - +0.8
274,129 + -0.5
274,129 + H281DRAFT_02136 0.28 -2.8
274,129 + H281DRAFT_02136 0.28 -2.2
274,190 + H281DRAFT_02136 0.39 -0.1
274,540 + +1.9
274,540 + -0.7
274,644 + -0.8
274,653 + -0.7
274,653 + -2.5
274,653 + +1.1
274,654 - -1.0
274,680 + -1.8
274,717 - H281DRAFT_02137 0.11 -1.0
274,903 + H281DRAFT_02137 0.23 -1.4
274,904 - H281DRAFT_02137 0.23 -0.5
275,053 - H281DRAFT_02137 0.33 +0.8
275,109 + H281DRAFT_02137 0.37 +0.3
275,475 + H281DRAFT_02137 0.61 +2.8
275,475 + H281DRAFT_02137 0.61 +1.8
275,478 - H281DRAFT_02137 0.61 +0.2
275,520 + H281DRAFT_02137 0.64 -2.1

Or see this region's nucleotide sequence